Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e24
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    29   0.64 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   0.84 
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   2.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   3.4  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.4  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   4.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   6.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   6.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.0  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.9  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   7.9  

>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = +3

Query: 297 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 464
           P +R+ +++  +E    LS E+TE+YF+    +S+   W+ P   V  +R+EL  + +E 
Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171

Query: 465 XQR 473
            ++
Sbjct: 172 KKK 174


>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1079

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 444  IDKQKELXQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNR 566
            +D+  E    Q  +  FSA V YHL D     QK++L   R
Sbjct: 894  VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKR 934


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 153 KILKKVDSEGSNQKIPPRL-RRNMERVEMLAR-PTARRLRSLWDEKCAILPPERRDKIKS 326
           K  K VD+E  N K PP L   ++E ++  A  P AR L ++ ++  A+L  +R +    
Sbjct: 9   KYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVL--KRINDTVG 66

Query: 327 ALEEDYFLSP 356
             E D  L+P
Sbjct: 67  IKESDTGLAP 76


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 54   KQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILK--KVDSEGSNQKIPPRLRRNMER 227
            +++ P   ++L+   E L+  K EL T  ++  K     K      N+++   L++ +E+
Sbjct: 1347 ERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVE-NLKKEVEQ 1405

Query: 228  VEMLARPTARRLRSLWDEKC 287
                A     RL + W+EKC
Sbjct: 1406 ----ANTKNTRLAAAWNEKC 1421


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 69  KTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMER 227
           K G  L+N  +   SS+ E ATD E   ++ +    E    ++P  +RR  +R
Sbjct: 40  KDGIPLDNDNDENDSSE-ESATDEEAERQVREGFIVEDEEDEVPQEIRRKKKR 91


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 372 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELXQRQKWLVNFSAQVAYH 515
           Y   L E+ +R  W       +   L +D++KEL  R+ WL +FS  +  H
Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 54  KQIMPKTGKKLEN-KPEPLKSSKPELATDSEQNVKILKKVDSEGSNQ-KIPPRLRRNME 224
           K+   + G+KL+    E LK  KPE   D   + K  + + SE +NQ K   R+ +++E
Sbjct: 43  KEANEEFGEKLQEITKECLKGKKPENTEDGATSNKAFEGLRSEIANQGKQHIRIAKDLE 101


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 426 VNRKELIDKQKELXQRQKWLVNFSAQVAYHLCDYI 530
           VN+   I K+K L  R K L++  + V +HL  +I
Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 84  LENKPEPLKSSKPELATDSEQNVKILK 164
           ++NK  PL+SS  EL+T ++  + + K
Sbjct: 1   MKNKDYPLRSSMDELSTKNDNEIDLEK 27


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 66  PKTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPP 203
           PK    L   P P   + P  +T++ Q     + V++ GS   IPP
Sbjct: 229 PKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP 274


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +3

Query: 120 PELATDSE-QNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAIL 296
           P L  + E  N  ++ ++   G  +   P L+      E  A   ARR + L +    +L
Sbjct: 280 PSLGKNGEGSNESVIMRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRLGE----LL 335

Query: 297 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWS 410
             +   +  + L  D   SPE+   +  AL   SK WS
Sbjct: 336 TGKHCSECGTPLYSDP--SPEELGIWLHALKYESKDWS 371


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 121 RNWQQIPNRM*KF*KRWILKEVTRKY 198
           R W  IP+    F K WI++++  KY
Sbjct: 37  RTWIWIPDSKESFVKAWIVEDLGEKY 62


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 87  ENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQ 191
           ENKPE   +SKP +  +  ++  +LK    E  ++
Sbjct: 451 ENKPEKSSTSKPPVPENKAEDSVVLKSSVPEDKSE 485


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 525 NHTSGMPPVR*N*PAISVVAEALFVYRSTPCG 430
           NHT G    R N  A+    + +FVY STP G
Sbjct: 33  NHTHGR---RRNTLALCTTKDQMFVYGSTPAG 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,245
Number of Sequences: 5004
Number of extensions: 48852
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)