Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20e24
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 36 0.023
11_06_0661 - 26009838-26010950,26011302-26011802 30 1.5
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 29 2.6
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 28 6.1
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 27 8.0
06_01_0546 + 3895007-3895888,3896506-3896682 27 8.0
06_01_0543 + 3883184-3884065,3884683-3884859 27 8.0
06_01_0533 + 3845128-3846009,3846627-3846803 27 8.0
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 27 8.0
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 27 8.0
02_05_0585 + 30155021-30155910,30156130-30157006 27 8.0
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 45 STKKQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNME 224
S+KK+++ G KL KP P K + + K KK+ + +N PP+ +RN+
Sbjct: 189 SSKKKLVKSVGSKLTGKPPPSPELKAGEKSTPPSSHKSKKKMTTTRTNSLKPPKPKRNLV 248
Query: 225 RV 230
+
Sbjct: 249 EI 250
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 213 RNMERVEMLARPTARRLRSLWDEKCAILPPERRDKIKSALE 335
R ++ VE++A AR LR W+E+ AIL E +++ALE
Sbjct: 493 RQLQAVELVAHTAARCLRLQWEERPAIL--EVVANLETALE 531
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +3
Query: 36 LN*STKKQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRR 215
L+ S K+I P+ + ++ L P LA +E S+ +++IPP+L++
Sbjct: 105 LSGSFDKEISPQLKQSIKMMERCLPIQPPCLARTTEMGKPTALFQLSDSFDKEIPPQLKQ 164
Query: 216 NMERVEML 239
+M+++ +L
Sbjct: 165 SMKKIGLL 172
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 192 KIPPRLRRNMERVEMLARPTARRLRSLWDEKC-AILPPERRDKIKSALEEDYFLSPEQTE 368
+I +L ME V+ LAR TA L + + E+C IL E+R + +D L ++
Sbjct: 273 EIEVKLATTMEEVDRLAR-TADELAAKFQEQCEKILVLEKRSAHSDRIIKDLMLQRDKAV 331
Query: 369 QYFQAL 386
+ +A+
Sbjct: 332 REAEAI 337
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 108 KSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKC 287
K ++ + A E ++ + + EG+N K+ + R +RVE T R+ R L +E C
Sbjct: 176 KVAEEKAAAREELKLERHHRRELEGANGKLVKEVARARQRVE-----TERKARELMEEAC 230
Query: 288 AILPPE 305
L E
Sbjct: 231 EELSKE 236
>06_01_0546 + 3895007-3895888,3896506-3896682
Length = 352
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 294 LPPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGG 422
+P D+I +A E + L PE+ E+Y ++ + G GG
Sbjct: 94 MPEPFLDEILAATREFFHLPPEEKERYSNVVAAADADGVGAGG 136
>06_01_0543 + 3883184-3884065,3884683-3884859
Length = 352
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 294 LPPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGG 422
+P D+I +A E + L PE+ E+Y ++ + G GG
Sbjct: 94 MPEPFLDEILAATREFFHLPPEEKERYSNVVAAADADGVGAGG 136
>06_01_0533 + 3845128-3846009,3846627-3846803
Length = 352
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 294 LPPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWSGPGG 422
+P D+I +A E + L PE+ E+Y ++ + G GG
Sbjct: 94 MPEPFLDEILAATREFFHLPPEEKERYSNVVAAADADGVGAGG 136
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -3
Query: 303 REAKL-RIFRPIKSAGDEPLAVPTFPPAPCYDVSVVVFSGYFLQN--PPFLKFLHSVRNL 133
R+A L R F P + G E +A+ PAP Y V F + + PPF F V L
Sbjct: 22 RQAGLPRRFMPESATGREVVALGEGRPAPHYPGRSVFFLSFTMAGLVPPFSSFFMDVLEL 81
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 292 FCLPKEETRLKAL*KKIIFLVPSKLNSIFKR*VNLRNVGRDQVER 426
F PKEE+R+ + ++ L KL R NL+++G D VER
Sbjct: 429 FSAPKEESRVSEAARMVVQLEEEKLILQKVRKCNLKSIGSD-VER 472
>02_05_0585 + 30155021-30155910,30156130-30157006
Length = 588
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 45 STKKQIMPKTGKKLENKPEPLKSSK--PEL--ATDSEQNV-KILKKVDSEGSNQKIPPR 206
+T +I+P+T ++ PEP + +K P++ + +S +V K+L++ D N K+ P+
Sbjct: 3 TTASKIIPQTLPEIPTTPEPQQYTKTAPDIPKSNNSRSSVPKLLQESDRGKLNHKLEPK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,701
Number of Sequences: 37544
Number of extensions: 316240
Number of successful extensions: 1216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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