Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e21
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   0.34 
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    24   3.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    23   4.2  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 115 LYYISTLFANKLIHHTFINRSKFANNFYF 29
           LYYIS+ F+N L+H  + N +    +FY+
Sbjct: 322 LYYISSAFSN-LLHCRYFNCNDRLRSFYY 349


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 26  IKIKIISKLRAINKRMMYEFISE 94
           +++ IISKL  +NK +  E +S+
Sbjct: 378 VRLNIISKLEVVNKVVGIELLSQ 400


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 11  PKQTLIKIKIISKLRAI 61
           PK+TL+ I I  KLR I
Sbjct: 363 PKKTLLTISIFEKLRLI 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,991
Number of Sequences: 5004
Number of extensions: 3762
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)