Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e20
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762...    28   5.2  
11_01_0381 + 2890778-2891506                                           28   6.9  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    27   9.2  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    27   9.2  

>03_05_0492 -
           24874517-24874960,24875672-24875815,24876214-24876282,
           24876452-24876570,24878292-24878580
          Length = 354

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 571 ASSASPDRWSTGLYDGCC 624
           A+ A+P RW+T   DGCC
Sbjct: 332 AAVAAPFRWATAAGDGCC 349


>11_01_0381 + 2890778-2891506
          Length = 242

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 299 STLMPRNLATNWTSKTWRSVS-RLERKSGVLCTE 201
           S L+P+ +A N  SK W  VS R +R++ V+C E
Sbjct: 173 SLLLPKQIAKNSASK-WSLVSKRFQRRNVVVCEE 205


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 198 LVSKKSSNAPINGTSDFENVMCFGSSGASPSA 103
           L S  SS++ + G SD  +   FGSS A+PS+
Sbjct: 116 LASSWSSSSFVFGASDTRSSFSFGSSKAAPSS 147


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 332 EVVTFDREPLANDL--HYMLMSKEDKLYIDDIDVSRVL 439
           E +  +   L++DL  H  +  +ED  Y+DD DV+R++
Sbjct: 548 EELELEHAELSHDLYSHKRVDDEEDDFYVDDQDVNRLI 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,831
Number of Sequences: 37544
Number of extensions: 300476
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)