Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e19
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042     31   0.85 
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977     30   1.5  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    29   3.4  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    28   6.0  
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    28   6.0  
05_04_0168 + 18686024-18686824                                         27   8.0  
04_03_0689 + 18746735-18748296,18748401-18748485                       27   8.0  
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    27   8.0  

>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
          Length = 360

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -3

Query: 488 VAKLVCLLLSFCVQFRLLVAGTIKYL-IFFL*YGHA-GSSQPSTSASRRTGPPSRNTSSP 315
           +A+    LL + + F ++++  ++Y  IF L +G   GS + + S++    PP R +SSP
Sbjct: 1   MARWTLRLLLWVLAFGVILSQLLRYATIFALAFGFGDGSRRRTLSSASSLPPPWRPSSSP 60

Query: 314 MISLRAQANRQ 282
           + + R++  R+
Sbjct: 61  ISAERSRRQRR 71


>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
          Length = 359

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 437 LVAGTIKYLIFFL*YGHAGSSQPSTSASRRTGPPSRNTS-SPMISLRAQ 294
           L AG    L+  +  G + ++ PST+A  RT  PSR+ S + M+ L A+
Sbjct: 281 LAAGVDDLLVVSIGSGSSSAATPSTAAGWRTPLPSRSPSPAEMVRLTAE 329


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 395 YGHAGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTAT 264
           +  A  + PS  +  R   P+R  S+P+  L+    RQG    T
Sbjct: 354 HARAAETPPSKCSLERASQPTRRASTPVNMLQTPEKRQGADILT 397


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 448 SSVFSWRVPLST*YSFCNTDTPVRHSPVLQLHVGLGRRPATLHLL*SVFVRKP 290
           S + S  +PL+  +SF    +P+    ++ LH   GR PA  H   S  +  P
Sbjct: 521 SDLPSLHLPLALAFSFLADPSPLPRRLLVVLHAAGGRYPAFYHAFASALLSLP 573


>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 386 AGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTATAHTAA 249
           AG+S  STSAS R  PP+R+    +  L A  ++Q P    +H AA
Sbjct: 2   AGAS--STSASARATPPARS----LPPLGASGSQQEPAATASHHAA 41


>05_04_0168 + 18686024-18686824
          Length = 266

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 IGDEVLRDGGPVLREAEVLGCDEPACPYY 399
           IGD V  +   VL     LG  EPAC YY
Sbjct: 96  IGD-VCDESAAVLSRLRELGASEPACVYY 123


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 388 TPVRHSPVLQLHVGLGRRPATLHLL*SVFVRKPTDKGHRPPRHTP 254
           TP +H+P  Q+H+G    P    L+ +           RPP+  P
Sbjct: 52  TPPQHNPAFQIHMGADASPQN-PLMAAAAAAAAAASAKRPPQKPP 95


>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
            1987805-1988305,1989010-1990016,1990131-1990781,
            1991337-1991633,1991735-1992013,1993070-1993198,
            1993291-1993491,1993651-1993793,1993878-1994190,
            1994349-1994488,1995320-1995398,1995484-1995753,
            1996208-1996425,1996521-1996632
          Length = 1623

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 370  GCDEPACPYYKKNIRYLMVPATRRRNCTQNDNKRQ 474
            GC+ P C   K+++R L   +  RR    N+  RQ
Sbjct: 1580 GCNVPRCRDLKEHLRRLQQQSDSRRRAAVNEMMRQ 1614


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,981
Number of Sequences: 37544
Number of extensions: 243959
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)