Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e18
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       51   1e-06
04_03_0649 - 18402976-18403220,18403305-18404499                       45   6e-05
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    34   0.12 
10_08_0009 + 14075929-14076789                                         33   0.21 
03_01_0436 + 3384526-3385236,3387857-3388720                           28   6.0  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +3

Query: 438 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 605
           +S+K+   G  V  +LS+G D   E+     ++ +   +  R AFINS + LA   GFDG
Sbjct: 98  SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157

Query: 606 IDLAWQFP 629
           +DLAW+FP
Sbjct: 158 LDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
 Frame = +3

Query: 267 YVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSL 446
           Y   + A + PL    A S  THL Y    + P    L+   +        D  RA+   
Sbjct: 45  YYLAADAHLRPLAALDA-SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV--- 100

Query: 447 KAKYPGLTVLLSVGGD---------ADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 599
           KAK   +  +LS+G           A +     +  +     +R AFI + V +A + GF
Sbjct: 101 KAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGF 160

Query: 600 DGIDLAWQFP 629
           DG+D+AW+FP
Sbjct: 161 DGLDVAWRFP 170


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 297 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 440
           PL+LDP      H+L  Y   +  TY LV     + +D  HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +3

Query: 432 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 599
           A+ + KA +P L+V+L++GGD  T +    N       +  A++ +       L + YG 
Sbjct: 70  AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127

Query: 600 DGIDLAWQ 623
           DG+D+ ++
Sbjct: 128 DGVDVDYE 135


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 315 ALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKAKYPGLTVLLS 482
           A+    HLL  +A    +TY LV   EN+ ++    NYR   +T+   +  G  VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,297,783
Number of Sequences: 37544
Number of extensions: 371132
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)