Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e10
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125463-3|AAD12860.1|  163|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    29   2.2  
Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    29   2.9  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    29   3.8  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    28   5.1  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   8.9  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   8.9  

>AF125463-3|AAD12860.1|  163|Caenorhabditis elegans Hypothetical
           protein Y49F6C.8 protein.
          Length = 163

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/97 (23%), Positives = 44/97 (45%)
 Frame = +3

Query: 342 MAAEPLRFPNLVTGFDRSPEHAARAALYTRYTQYEWNQNTIKNYNESDAKRNFSERVRND 521
           MA  P  F + V G  R+   + RA L+    +    QN+++ Y E + +    + +R  
Sbjct: 1   MAQNPNSFTDSVFGMIRNLLVSIRAGLFELTIKQPVTQNSLQRYQE-EHREEKQQYLRQA 59

Query: 522 IMRVLRETDEIGTQGQRDSGRRIGERITDTTFWRNEV 632
           I+ +  +++E    GQ      + + I + T  RN +
Sbjct: 60  ILDLAEDSEE-EDDGQPLDKETLSKMIAELTIERNNL 95


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 631 TSFLQNVVSVILSPILRPESLCPWVPISSVSLNTRIMSFLTLSEKFLFASDS 476
           TSFL+N +S+I +   +   +  W+    VS+    +  + LS + LF  DS
Sbjct: 496 TSFLENYISLITNAFFQIFVVLVWIAFLVVSIYGITIMNINLSPRKLFMEDS 547


>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 584 ENWRKNNRHYVLEERGLYRDGT 649
           E+W  N  HYV+E   +Y +GT
Sbjct: 47  ESWNSNGTHYVIENYKVYPNGT 68


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 562 WVPISSVSLNTRIMSFLTLSEKFL 491
           WVP+S+V++N  ++ ++  S KF+
Sbjct: 188 WVPVSAVTVNVSMILYIKFSRKFI 211


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
            protein Y39D8B.1 protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 471  YNESDAKRNFSERVRNDIMRVLRET-DEIGTQGQR-DSGRRIGERITDTTFWRN-EVSIE 641
            YN+S A  N+    RNDI  +L     ++  + Q     R++G  +  TT ++N ++S +
Sbjct: 1312 YNDSHAYENYRNLRRNDIPDILENNIHQMAREEQAFKVARQVGRELMRTTHYKNFQISRK 1371

Query: 642  M 644
            M
Sbjct: 1372 M 1372


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 613 VVSVILSPILRPESLCP-WVPISSVSLNTRIMSFLT 509
           V  V +S IL PE +   WV  S VS+N  I+ F+T
Sbjct: 717 VAVVAVSLILIPEPVASLWVSFSIVSINIGILGFMT 752


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 359 PVPEPSDRLRPQPRARGPSSSL 424
           PVP+P    RP PR   P S L
Sbjct: 355 PVPQPQQATRPAPRPVAPKSHL 376


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 620  PKRSVCYSFANSPPGVPLSLGTNFVGFP*HPHNVVPDSFRKIPLR 486
            P+ +VC   A +P  VPL+ GT   G   + +N  PD  + +P +
Sbjct: 995  PETTVCCPGATNPCSVPLAPGTGNAGLARYYYN--PDDRQCLPFQ 1037


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 620  PKRSVCYSFANSPPGVPLSLGTNFVGFP*HPHNVVPDSFRKIPLR 486
            P+ +VC   A +P  VPL+ GT   G   + +N  PD  + +P +
Sbjct: 1413 PETTVCCPGATNPCSVPLAPGTGNAGLARYYYN--PDDRQCLPFQ 1455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,410
Number of Sequences: 27780
Number of extensions: 366618
Number of successful extensions: 1165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)