Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e08
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    30   0.24 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   2.2  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   6.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   6.7  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    25   6.7  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 389 RPRSHLCVGEDAHLKHGAGHVGSDGPPLGLLYEILPILSGHV 514
           + +S+ C   ++H K+  GH G   PP  LL  I+  +  HV
Sbjct: 691 KSKSYACCTSESH-KYVQGHCGGQAPPFPLLKVIIDSIPVHV 731


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 493 KNLIEQTQRWTIRANMPSTMLEM 425
           K LIEQT    +R+N+ ST+LE+
Sbjct: 429 KELIEQTYPEILRSNLSSTVLEL 451


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = +3

Query: 231 SAHCDICDSHLETIAKWLSCNGDVWGVGPTVVFASAAALFLYNELEATIFTAGDHAHISA 410
           S   +I  +H + + K L     ++ +  T +FAS    F ++ L  T         +  
Sbjct: 72  STEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGI 131

Query: 411 LEKTLISSMVLGMLALMVHLWV-CSMRFFQYYLDTLIRDSPSMLLEMTTA 557
            +KT I  + + +L  ++ L    S+ +  Y L    R++    L MT A
Sbjct: 132 ADKT-IDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIA 180


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 140 VRNGDYENSTF 172
           V+NGDYENS+F
Sbjct: 667 VKNGDYENSSF 677


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 219 SVSFSAHCDICDSHLETIAKWLSCNGDVWGVGPTVVFASAAALFLYNELEATIFTAGDHA 398
           S+ +SA       H     +W+  +GDV  VG T   A+A    ++ EL     T     
Sbjct: 33  SMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGD 92

Query: 399 HISALEKTLISSMV 440
            I A+E    +S V
Sbjct: 93  GIGAVESVKSASDV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,870
Number of Sequences: 5004
Number of extensions: 51608
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)