Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20e08
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0692 + 30973171-30973908 31 0.74
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 30 1.3
03_04_0062 + 16965323-16966024 29 2.3
02_01_0018 + 119890-120238,120331-120424,120518-121529 29 2.3
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 29 4.0
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 28 5.2
08_02_0656 - 19740436-19741593 28 6.9
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 6.9
05_04_0230 + 19250513-19250633,19250681-19251165 28 6.9
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297... 27 9.2
03_02_0929 - 12475751-12476249,12478077-12478090 27 9.2
03_02_0022 - 5054548-5054663,5054899-5055103,5055194-5055261,505... 27 9.2
>02_05_0692 + 30973171-30973908
Length = 245
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 311 RAHGGLRECRGPVSVQRARGDYIHGRRPRSH 403
R GG R+CRGP Q RG R+PR H
Sbjct: 213 RLAGGGRQCRGPACRQSWRGGGASVRQPRIH 243
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 487 LIEQTQRWTIRANMPSTMLEMSVFSNAEM*AWSPAVNIVASSSLYRNRAAALAKTT 320
LI RWT + PST ++ S + S ++N +SS+L+ + AA L +T
Sbjct: 431 LISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSIN--SSSNLFSSAAAVLRPST 484
>03_04_0062 + 16965323-16966024
Length = 233
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 286 VATATCGGSGPRWSSRVPRPCFCTTSSRRLYSRP 387
VATAT WSS+ RP F T + R + P
Sbjct: 8 VATATAAAGPTAWSSQKYRPGFATNAQRSIIRPP 41
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 303 WGVGPTVVFASAAALFLYNELEATIFTAGDHA 398
W VGPTV+ AA ++ + L A + GD A
Sbjct: 69 WVVGPTVMLLFAAVIYFTSNLLADCYRTGDPA 100
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 269 DSEMVELQRRRV--GGRAHGGLRECRGPVSVQRARGDYIHGRRPRSHLCVGEDAHLKHGA 442
D+++ E RRRV GGR HGG+ G + + +RG + A +HG
Sbjct: 437 DAKLREDSRRRVNVGGRNHGGVG--GGEATKRLSRGHKSMQDTTAAATAAAVVASQRHGH 494
Query: 443 GHVGSD 460
GHV ++
Sbjct: 495 GHVHAE 500
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 404 DVSVVSGREYSRLELVVQKQGRGTREDHRGPDPPHVAVATQPFRYRFQVRVTNITMCREA 225
++S+ R + L L+ RG D P + + T PF + Q V N+ +C EA
Sbjct: 303 NISLFESRLGAMLFLISALLSRGLERIQADRDDPSLPLVTAPFGHASQ-EVVNLLLCGEA 361
>08_02_0656 - 19740436-19741593
Length = 385
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 208 WRVDQLASLHIVIFVTLTWKR*RNG*VATATCGGSGPR 321
W Q +H ++ + W+ R G VA GG G R
Sbjct: 309 WPAGQRVGVHASLWEKMVWEEQRGGWVADEEVGGGGVR 346
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 363 LEATIFTAGDHAHISALEKTLISSMVLGMLALMVHLWVCS 482
L+ IF++ + I EK + + ++GMLA + +W C+
Sbjct: 269 LDLRIFSSSKPSFIKITEKRAVQA-IMGMLASSIRVWHCA 307
>05_04_0230 + 19250513-19250633,19250681-19251165
Length = 201
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 262 WKR*RNG*VATATCGGSGPRWSSRVPRP 345
W+R R A A GGSG RW RP
Sbjct: 163 WRRERGRPAAGAGSGGSGGRWQRERDRP 190
>06_01_0417 -
2972877-2973876,2973946-2974851,2975823-2976616,
2977887-2977977,2978305-2978384
Length = 956
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 499 IIWTR*SEIVQACCSK*QQRVYS 567
I+ TR +++ CCS+ Q R+Y+
Sbjct: 353 IVTTRNADVANTCCSRPQDRIYN 375
>03_02_0929 - 12475751-12476249,12478077-12478090
Length = 170
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 279 WLSCNGDVWGVGPTVVFASAAALFLYNELE 368
W +C GD +G + V ++ +FLYN LE
Sbjct: 123 WANCGGDDHQLGNSSVASNFPFVFLYNFLE 152
>03_02_0022 -
5054548-5054663,5054899-5055103,5055194-5055261,
5055573-5055861,5056687-5056753,5057928-5057974
Length = 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 342 ALFLYNELEATIFTAGDHAHISALEKTLISSMVLGMLALMVHLWV--CSMRFFQYY 503
A F+ NE+ + + H + ++I ++LG+L +VHL + CS+ F Y
Sbjct: 17 AAFVANEIPLFMNQSPPHVWMLMSRPSVIIKLILGLLWFIVHLAISLCSLWFDLIY 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,189
Number of Sequences: 37544
Number of extensions: 386367
Number of successful extensions: 1052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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