Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e05
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    29   0.48 
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    29   0.84 
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   3.4  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   4.5  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   7.8  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 355 VASLTVKLFTRKRISLFHYEGIMECKNKIITVRP 254
           ++     LFT+ R  L HY GI E   K+ T  P
Sbjct: 397 ISEFLTNLFTKLRCVLMHYRGISEFMTKLETKTP 430


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 222 GLTLFYLNCGIPRNCTQREAFRYSKLFICVSSFLWCYWNVFLSY 91
           G+  FY   G+ R          S L +CVS F W +W   L++
Sbjct: 63  GVAFFY--SGLARRKNTLALIMLSMLGLCVSFFQWYFWGYSLAF 104


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 632 GKRGLKSNTRLKLCLNCISMEII*ARFVLRNC 537
           G  G+ S   + LCLNCIS+ I  +R V   C
Sbjct: 335 GALGIFSLLVIALCLNCISLLIAASREVFAFC 366


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = +3

Query: 87  FDTIKIRSNNTTGKKKHR*IASNIGKPHAACNFEESHNLDKIALNRKSAKRNSIKLGLTV 266
           FDT+ I +NN  G  K   +  +     + C  +E+     +    K   R  IK+G+ +
Sbjct: 197 FDTVGIAANNVKGVTKVFNVLDHPDINDSTCLTKEARYF--VKEQHKKLSRKPIKIGIPI 254

Query: 267 --IILFLHSIIPS*WNKDMRFLVNN-FTVRE 350
              +   H  +   WN+ +  L +N + V+E
Sbjct: 255 DWNVSETHPNVLDKWNEFISLLKSNGYLVQE 285


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 560 ARFVLRNCISDKSMSFYL 507
           ARF L NC+S    +FYL
Sbjct: 323 ARFYLENCVSKLGETFYL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,082
Number of Sequences: 5004
Number of extensions: 55121
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)