Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e05
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin...    29   3.2  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    29   4.2  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    29   4.2  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AC024785-2|AAF60599.2|  467|Caenorhabditis elegans C-type lectin
           protein 71 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 114 YWNVFLSYQTFLDVIVSINLYNMTID-ILTN 25
           YW+   +Y T L + +S N+YNMTID I TN
Sbjct: 414 YWDSNTNYNT-LTIGLSQNVYNMTIDYIYTN 443


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 228 FFGLTLFYLNCGIPRNCTQREAFRYSKLFICVSSFLW 118
           F  + +F++NC    +C  RE F+      C+S   W
Sbjct: 11  FLHIPIFFVNCSNSTSCVAREEFQCKMDDSCISMKKW 47


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 228 FFGLTLFYLNCGIPRNCTQREAFRYSKLFICVSSFLW 118
           F  + +F++NC    +C  RE F+      C+S   W
Sbjct: 11  FLHIPIFFVNCSNSTSCVAREEFQCKMDDSCISMKKW 47


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 228 FFGLTLFYLNCGIPRNCTQREAFRYSKLFICVSSFLW 118
           F  + +F++NC    +C  RE F+      C+S   W
Sbjct: 11  FLHIPIFFVNCSNSTSCVAREEFQCKMDDSCISMKKW 47


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -1

Query: 334 LFTRKRISLFH-YEGIMECKNKIITVRPSLMLFRLALFRFNAILSKLWDSSKLHAA*GFP 158
           LF+   ++  H Y G ++C N  IT+  +++L+   L      +S +WD++ + A   F 
Sbjct: 14  LFSSFEMNEIHKYPGYVQCFNIPITILTAILLYEYEL----VDMSDVWDNNTVFAIYTFC 69

Query: 157 IFEAIYL 137
           I   +++
Sbjct: 70  ILMLVFI 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,202
Number of Sequences: 27780
Number of extensions: 297455
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)