Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e04
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    31   0.70 
U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    30   1.2  
Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin prot...    28   4.9  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 412 RGQPGELFPDKPWKGQQNEPNP-AVVGMSGIQQTPVG--GEPQGQASPGIFNSRGA 570
           +G PG      P +GQ  +P   A+VG++G +  P G  GEP  Q  PG+    GA
Sbjct: 185 QGPPGSAGRAGP-RGQAGQPGTIAIVGLAG-RPGPQGPLGEPGAQGEPGVDGKDGA 238


>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = +1

Query: 415 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRGAADGSD 585
           G PGE   D P +G     +P   G SGI   P    P G A P      G A G +
Sbjct: 220 GMPGEPGKDAPQEGSPVPGDPGPPGDSGIPGPP---GPPGMAGPDGIPGMGGAKGQN 273


>Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical
           protein K08C9.4 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +1

Query: 415 GQPGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQA-SPGIFNSRGAADGSDIS 591
           G PG   PD        +  P   G +GI   P    PQG A + G     GA   +  +
Sbjct: 140 GAPGPAGPDGEAGAPGPDGQPGQDGPAGIDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKN 199

Query: 592 SRRFIDYPAPQMQDSP 639
            +R    P PQ  + P
Sbjct: 200 GQRGQGAPGPQGPEGP 215


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 556 NSRGAADGSDISSRRFIDYPAPQMQDSP 639
           N+ G  DGS I  RR  +  +P MQ++P
Sbjct: 200 NAMGKLDGSFIKDRRIYNLSSPDMQNTP 227


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -3

Query: 524 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 345
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 344 STFSSSMYSWHSSAFS 297
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -3

Query: 524 SPPTGVCWMPLIPTTAGFGSFCWPFHGLSGNSSPGCPLVCTILSPFTSTTQRNRAQHVGN 345
           SP T      +  +++   +   P    S ++SP   +  +  +P TSTT  + +    +
Sbjct: 452 SPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511

Query: 344 STFSSSMYSWHSSAFS 297
           ST SSS+ S  SS  S
Sbjct: 512 STASSSVSSTASSTQS 527


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 139 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV-GC 279
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     + GC
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGC 148



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 YRCEIRDGKYFIAAVGCRKPKIPENALECHEYI 327
           Y+CEIR GK    AVGC    I EN  + ++ I
Sbjct: 243 YQCEIRPGKRSHRAVGC---SIVENGRDINKVI 272


>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +1

Query: 325 IEDENVEFPTCCARLRCVVEVNGERIVQTRGQPGELFPDKPWKGQ--QNEPNPAVVGMSG 498
           IE ENVE  T  A L+ +   N + I+Q   +   L  +   KG+  +N      +G   
Sbjct: 444 IESENVELITRLATLQKIHSENADSILQLESENSRLRREVTEKGELIENLIREKPLGTGF 503

Query: 499 IQQTPVGGEPQGQASP 546
            QQ  +G        P
Sbjct: 504 QQQNNLGSSSSSSVQP 519


>AC024791-36|AAF60654.3|  481|Caenorhabditis elegans Innexin protein
           21 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -2

Query: 573 RCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHYSL 394
           R + ++ + R       A  RC+L +A+  N++ +LVL    WF+   F  L S +HY++
Sbjct: 254 RLAMSIGFYRSYTNAHSAVARCML-SANFLNAKAFLVLYW--WFLLVSFISLCSAIHYTI 310


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 390 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 286
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
            protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -2

Query: 576  IRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLLALPWFIGEQFARLPSGLHY 400
            I C  A+KYSRR L +   TDR          +++W         + E   + P    Y
Sbjct: 1019 INCGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKY 1077


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 399 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDS 268
           SLS+ FD  T+    +   D++  D F   +  F   WFST+ +
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTAQT 262


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 454 GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRG--AADGSDISSRRFIDYPAPQ 624
           G+Q    P      GI +T   G P  + +PG     G   A G+D   + F  Y AP+
Sbjct: 77  GRQKRQTPQTCCSCGIGETGPAGVPGQEGAPGNDGKAGQPGAPGADADEQGF-HYKAPE 134


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 454 GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFNSRG--AADGSDISSRRFIDYPAPQ 624
           G+Q    P      GI +T   G P  + +PG     G   A G+D   + F  Y AP+
Sbjct: 77  GRQKRQTPQTCCSCGIGETGPAGVPGQEGAPGNDGKAGQPGAPGADADEQGF-HYKAPE 134


>Z75554-3|CAA99955.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC455.4 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 344 STFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISHL*R 225
           ST   + YS+     S ++GF H    MKY   L +HL R
Sbjct: 11  STLFGNAYSYKFLVISPVYGFSH----MKYMAELANHLAR 46


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 250 GKYFIAAVGCRKPKIPENALECHEYIE-DENVEFPTC-CARLRCVVEVNGERIVQTRGQ 420
           GK+ I+ VG  KPK+   ++     I  +  + F  C C      +   GERIVQ R +
Sbjct: 265 GKFIISQVGDDKPKLTLQSMIVGFIINFNSAIHFLLCYCLHNVFTISECGERIVQKRSR 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,292
Number of Sequences: 27780
Number of extensions: 377499
Number of successful extensions: 1112
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)