Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e02
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.24 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    30   0.24 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.42 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   3.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.2  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    25   6.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 18/81 (22%), Positives = 40/81 (49%)
 Frame = +2

Query: 374  KLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQ 553
            ++ A+    +NE+L    +K       + +P N+  + P+A+     +Q G+   + ++ 
Sbjct: 1232 RIKAEAQRRMNERLAALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQIQPGK-QASAVSS 1290

Query: 554  NIPSVNNPAKIGMGPEIINMV 616
            N+P+V+  A I   P ++  V
Sbjct: 1291 NVPAVS--ASISTPPAVVPTV 1309


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 365 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTIS 463
           NP ++  D YN     L++ V K  +HD+NT+S
Sbjct: 141 NPSRILLD-YNRAGTPLLEIVTKPCFHDVNTVS 172


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 452 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 550
           +T++P +T  ++   +  GLP  S  TPL+N T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNST 644



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 452 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 550
           ++I P +T  ++   +  GLP  S  TPL+N T
Sbjct: 674 SSIVPTSTFTSSGFNTTSGLPTSSASTPLSNST 706



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 452 NTISPANTVMNNPIASQIGLPLQSGQTPLNN 544
           +T++P +T  ++   +  GLP  S  TPL+N
Sbjct: 705 STVAPTSTFTSSGFNTTSGLPTSSVSTPLSN 735



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 NTISPANTVMNNPIASQIGLPLQSGQTPLNN 544
           +T++P +T  ++   +  GLP  S  TP +N
Sbjct: 643 STVAPTSTFTSSGFNTTSGLPTSSASTPSSN 673


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 188 YYQN*KRFSPYSHNQHFLIDS*HYPIHLKFFVYLRP 81
           Y  N   FSPY H +H  I S +YP    + VY  P
Sbjct: 470 YESNNSSFSPYYHKRHRQI-SPYYPTSSVYGVYESP 504


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +2

Query: 320 PAGSSHVNRPCFGQCNPPKLYAD------TYNYLNEKLMQPVVKEVYHDLNTIS 463
           P G    N+PCF +     +++       T N    K + P   EV  DLNT S
Sbjct: 368 PGGLRRANKPCFNKETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLADLNTAS 421


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 407 HLNSYKCQHKVLVDCIDQSKVYLHD*SLQD 318
           H+   K  H + + C+D +  YL + SL+D
Sbjct: 356 HMEKVKSLHSLSIICLDMAISYLMEFSLED 385


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 401 LNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQS--GQTPLNNLTQNIPSVNN 574
           L   +  P V  +  +L      N +MN+P  + +    QS  G   L++L  N P + N
Sbjct: 234 LGSLMNNPAVMNMARNLMQSGALNNIMNDPNIANMARNFQSGGGMPDLSSLANN-PQLQN 292

Query: 575 PAK 583
            A+
Sbjct: 293 LAR 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,691
Number of Sequences: 5004
Number of extensions: 46920
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)