Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20e02
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    29   4.0  
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291...    29   4.0  
12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373...    28   5.3  
05_03_0276 - 11485123-11485136,11486549-11487557                       28   5.3  
09_01_0128 + 1932721-1935181,1936099-1936256                           28   7.0  
06_01_0769 - 5745324-5746970                                           27   9.3  
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    27   9.3  

>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 365 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLP 514
           N   +  +T+ YL+  L+   + E+  +L T+  +N  ++ P+ S IG P
Sbjct: 581 NMETMLLETF-YLDSNLITGEIPELPINLETLDISNNYLSGPLPSNIGAP 629


>08_01_0325 +
           2917942-2918193,2919057-2919340,2919453-2919549,
           2919677-2919712,2920570-2920715,2920882-2920987,
           2921160-2921219,2921848-2921898
          Length = 343

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 563 SECSVLNYLTGFVLIVMEDRFEMLLGYSSQCL 468
           S  +V N   G   + ++DRFE+L G   +C+
Sbjct: 22  SSSAVENLAAGMAAMSLQDRFELLRGIGEECI 53


>12_02_1085 -
           25935688-25935948,25936589-25936657,25937244-25937315,
           25937693-25937791,25937927-25938007,25938099-25938586,
           25938728-25938857,25939994-25940239
          Length = 481

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 404 NEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQ 553
           N  + Q ++K+ YH +  +   +  M NP+A +    LQS    L++ T+
Sbjct: 273 NRSIDQKILKKEYHRMVLLVHPDKNMGNPLACESFKKLQSAYEVLSDFTK 322


>05_03_0276 - 11485123-11485136,11486549-11487557
          Length = 340

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 176 NSDNNPQNLANSYST-NHGSC 235
           N+DNNP N     +T NHGSC
Sbjct: 292 NTDNNPSNTNGDDTTNNHGSC 312


>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 287 SHARENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQN*KRFSPYSHNQHFL 135
           SH +E H +C   ++   +   +  N L   E +    +R++  S  +HFL
Sbjct: 328 SHGQETHPFCSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFL 378


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 284 HAR-ENHSYCDCDNRLVDNFHDL*NNCLLSSEDYY 183
           H R +NH++C+ D+R++D F    N  +L S+ Y+
Sbjct: 254 HLRLQNHTFCEEDHRVLDRF----NWMVLRSDSYF 284


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 246 VVTVTIAVVLTGMAASIHTLVNQVIL 323
           ++ VT+A VL+G+A+S+    +QV+L
Sbjct: 221 IIPVTVASVLSGLASSLCQWASQVVL 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,114
Number of Sequences: 37544
Number of extensions: 262158
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)