Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d23
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    33   0.030
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    29   0.49 
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   1.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    28   1.5  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    28   1.5  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   4.6  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   4.6  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    26   6.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   6.0  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.0  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   8.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +3

Query: 360  ISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQT 539
            +SN+     + S +QE+  L  S S+     DN    G  I E EK++++   +LN  QT
Sbjct: 1253 VSNDQTDTPIISGSQEVQLLYESNSVLRK--DNDAKLG-KIQELEKEVEKLNASLNPLQT 1309

Query: 540  EKKNAIRKQMLTKAFKLKLLEVEN 611
            E  N ++ ++  K   L L++  N
Sbjct: 1310 E-INELKAEIGAKTASLNLMKEYN 1332


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
 Frame = +3

Query: 162 DNKMNAKDHNNECGNDVTPQLIDDSEVKLKERIAQCRDIIESXXXXXXXXXXXQNALKVS 341
           D+ +N+K  +N   N   PQ +DD  +  K+ I+       +               ++S
Sbjct: 410 DSPLNSKIEDNLIDNLKYPQSLDD-HLSSKKPIS----YFSNKLTHQTLPNVFTQLSELS 464

Query: 342 PAHFESISNNSPTFSLTSN--NQELDDLELSKSIYSTCIDNKMNYGVNINE-YEKQLQRY 512
             H  S++    T++L      Q + + E  + +++   +N  NY VN  E    Q +++
Sbjct: 465 KCHEASLAEKQLTYNLAMEALEQTVRETETCQRLWNERTNNDENYLVNQREDLIHQCKKF 524

Query: 513 QHTLNIAQ 536
            HTL  A+
Sbjct: 525 LHTLKTAR 532


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 495 SHTH*Y*LHSSFYCRCTYYRCFLIILDHPVLD 400
           S+TH Y +H +  CRC Y   FL +L  P L+
Sbjct: 312 SYTHRYPVHRAIMCRCEY---FLDMLAGPFLE 340


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 587 FKSFC*HLLPNSVFLFRLSYI*CVLISLKLFLILIDI 477
           F   C HL+PN++FLF  + I    +   +F +L  I
Sbjct: 42  FFLLCFHLVPNALFLFPWTIITTSFVDANVFTLLSSI 78


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 413 IQFLIIRSQRKCGTVIGNGFKMSR 342
           +  ++ R+QRK  TVI +GFK+SR
Sbjct: 19  LDVVLSRTQRKTPTVIRSGFKISR 42


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 120 IDNNEQPKLDEKYHDNKMNAKDHNNECGNDVTPQL 224
           +DNN +  +  + +D ++++ D  N   NDVT QL
Sbjct: 291 VDNNGRVWMTSQEYDTEVSSTDERNFRANDVTLQL 325


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 336 VSPAHFESISNNSPTFSLTSNNQELDDLELSKS 434
           V P HFE +   S TF   ++N  L    +SKS
Sbjct: 5   VDPVHFERLKIQSVTFGSANDNASLQVHNVSKS 37


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +3

Query: 321 QNALKVSPAHFESISNNSPTFSLTSNNQ----ELDDLELSKSIYSTCIDNKMNYGVNINE 488
           +    +S +HF S+  N    S  SNN+      D+  L+   +S  ++   +   N+  
Sbjct: 149 EGVTSLSDSHFNSLEANLKAISKDSNNKAHNNRYDESSLTNPEFSILVERLKSIEENLQS 208

Query: 489 YEKQLQRYQHTLNIA 533
            ++++   + +++++
Sbjct: 209 LQERISHCERSVSLS 223


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 336 VSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNK 461
           VS  H E   NN+  FSLT++ Q   ++    S +   +D++
Sbjct: 127 VSQIHTEQNFNNNDAFSLTNSQQAFSEIGYDASNWIDELDSQ 168


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 566 LLPNSVFLFRLSYI*CVLISLKLFLILIDINSIVHFIVDARTIDAF 429
           LL +S+F FRLS +     SL ++   I   S V   VDA    AF
Sbjct: 3   LLDSSIFRFRLSSLHVSSRSLGVYFAGIMFASAVWVFVDAALYSAF 48


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +3

Query: 357 SISNNSPTFSLTS---NNQELDDLELSKSIYSTCID-NKMNYGVNINEYEKQLQRYQHTL 524
           SISN SP F+LT+        +D+++  SI       N  +  + + E   +L       
Sbjct: 310 SISNQSPVFTLTTMELTRNFPNDIDVESSIVDKQYSVNSASNELRVMEKLNELDELAEED 369

Query: 525 NIAQTEKKNAIRKQMLTKAFKLKLL 599
           N  ++  +NA RK  +  A  L+LL
Sbjct: 370 NYEESVDENANRKSKVL-AQHLELL 393


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 459  KMNYGVNINEYEKQLQRYQHTLNIAQTEKKNAIRKQMLTK-AFKLKLL 599
            + NY   + EY++Q+  Y   +   ++E +     Q + +   KLKLL
Sbjct: 910  RANYSTRLEEYQRQINSYNVRVAQIKSEHQRRCESQPIPEDEAKLKLL 957


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +3

Query: 474 VNINEYEKQLQRYQHTLNIAQTEKKNAIRKQMLTKAFKLKLLEVENQCNIELLRVN 641
           VN++ +E++  RY+ T    + E+K   R+  + +A K KL+  + +  +    V+
Sbjct: 10  VNVSRHEQKRIRYKLTPEEVKAERKERKRRAAIQRAEK-KLIRAKGEALVAFQAVS 64


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 LKVSPAHFESISNNSPTFSLTSNNQEL 410
           L+ SP H + +S++  T SL +NN  L
Sbjct: 519 LRGSPIHNQPVSSSKSTASLNTNNNGL 545


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +3

Query: 342 PAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHT 521
           P    + S +  T S    N  +  + LS  +    +DN   +  N+   E+Q +R+Q T
Sbjct: 160 PVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAALWQENMENRERQ-RRHQET 218

Query: 522 LN 527
           ++
Sbjct: 219 ID 220


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 336 VSPAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMNYGVNINEY 491
           VS     +IS+N P+ + +S +Q  +   L+ S+Y +   ++     + NEY
Sbjct: 761 VSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEY 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,750
Number of Sequences: 5004
Number of extensions: 42103
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)