Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d22
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    31   0.13 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.95 
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   2.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.9  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    26   3.8  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   3.8  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   5.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   6.7  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   6.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   6.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.8  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   8.8  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 146 TRAIDEIASDMQTDRCRWSRSLLGHSFSMPPLSSSERNDCGTVNFFKAWLIEHE 307
           +R +D++  +     C     ++GH   M PL+   R+D G    F+A++   E
Sbjct: 445 SRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHRSDAGLCERFEAFVATKE 498


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 414 WFWLLSAYLSSVRRY-WDKTIRLWRI 488
           W W+LSA LSS   + WD  I  WRI
Sbjct: 289 WLWILSALLSSAYTFLWDVFID-WRI 313


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 418 NHDEHWYNQINQQRQDSTEQPPQTNHHQETGQH 320
           N ++HWY+      +D      Q NH+ E+G H
Sbjct: 373 NFEQHWYDA-----EDYESTTSQLNHYSESGAH 400


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -3

Query: 415 HD--EHWYNQINQQRQDSTEQPPQT---NHHQETGQ 323
           HD  E W  Q  +Q  D++ +PP T   N+ Q TG+
Sbjct: 8   HDLSEEWIPQPQEQGSDNSSEPPTTSNVNNTQSTGR 43


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 384 NNVRTARSSHHRPITTRKLAN 322
           N   T  S+H R +TTR+LAN
Sbjct: 92  NGTTTGISAHDRALTTRQLAN 112


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 612 PNSTSLFQTTFPTIP 568
           PNST+   TTFP++P
Sbjct: 195 PNSTNFASTTFPSVP 209


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = -2

Query: 434 RRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSPAPPRVQLATP 285
           R   P PRRA      P  S    AA     PP      PAP RVQ A P
Sbjct: 5   RSAAPPPRRAA-----PARSASTAAAL----PPRTMAPPPAPSRVQQAPP 45


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 546 QQINHVLIFSAIFINILRNRFARA 475
           Q ++ V+IF+++F++I RN+ + A
Sbjct: 84  QHLSSVVIFASVFVSIYRNQLSCA 107


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 360 SHHRPITTRKLANITCASSCSISHALKKLTVPQSFRSDEDNGGMLKLCPSRLLDHR 193
           ++ +P+  R+L  +       IS AL  L V + FR+   NG    +C SR    R
Sbjct: 77  TNRKPLKQRRLFQLHNFILTIISGALLALLVEEVFRNYMRNGLFYCVCDSRHFTQR 132


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 417 FWLLSAYLSSVRRYWDKTIRLWRIYCEVY 503
           FW L  Y+     YW    +L+  Y + Y
Sbjct: 168 FWFLGLYIYRSSNYWSNEEKLFEDYPQYY 196


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 459 WDKTIRLWRIY 491
           WDKT+R+W I+
Sbjct: 487 WDKTVRIWDIF 497


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -2

Query: 485 SPEPDSFVPIAAHGAEVRRQQPK-PRR 408
           S  P SF P A H   V  + PK P R
Sbjct: 215 SSRPSSFAPPAGHAPNVTSESPKFPNR 241


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 77  EMPSPLTQRQLRRRSLYTSLYYATRAIDEIASDMQT 184
           E+P P T  +++R  LY++++ A          ++T
Sbjct: 30  EIPEPETLSEMKRHPLYSNIFNADNNTTSFTEQIET 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,697
Number of Sequences: 5004
Number of extensions: 51022
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)