Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d22
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 35 0.060
03_01_0019 + 167900-168343,168567-168751,169076-169430 32 0.32
04_03_0239 + 13205509-13206090 30 1.3
03_01_0580 + 4293079-4293582,4293797-4294037,4294982-4295160,429... 28 6.9
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 6.9
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 27 9.1
08_01_0421 - 3735155-3736067,3736154-3736176 27 9.1
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743... 27 9.1
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 9.1
01_03_0195 - 13674138-13674438,13674518-13674688,13674771-136756... 27 9.1
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 34.7 bits (76), Expect = 0.060
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = -2
Query: 476 PDSFVPIAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSP---APP 306
P+ P+ A + VR P P + P + H A T PP P P AP
Sbjct: 114 PEELSPVGAPRSRVRAMPPSPSLSP-----PAKAPSHSHAKTPSMPPAERPALPPTKAPA 168
Query: 305 RVQLATP*RN*PCHSHS 255
+ ATP + P ++HS
Sbjct: 169 AISPATPPQLSPANAHS 185
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 458 IAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSPAPP 306
+AAHG + +PKP + N ++S + + + P PT+P PP
Sbjct: 23 LAAHGCSAKHHKPKPTPGGISGN-ASSSSSNSSTPSIPPPVAPTPTAPTPP 72
>04_03_0239 + 13205509-13206090
Length = 193
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 286 GVAN*TRGGAGDVGQFPGGDWSVVAAPC 369
G A+ RGG+G QF GG VVAA C
Sbjct: 38 GRADPVRGGSGGADQFRGGGDDVVAARC 65
>03_01_0580 +
4293079-4293582,4293797-4294037,4294982-4295160,
4295319-4295674,4295761-4296100
Length = 539
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 161 EIASDMQTD--RCRWSRSLLGHSFSMPPLSSSERN 259
E S++ T RCRW LLG F++P + R+
Sbjct: 444 ESVSNLHTSELRCRWLAGLLGGRFALPAVEEMVRH 478
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = -3
Query: 550 FPTNKSRFDIFRHFHQYTSQ*IRQSRIVLSQ*RRTEL--RYADNSQNHDEHWYNQINQQR 377
FP ++ ++ H + Q Q+RI R+ + ++ ++QNH + Y Q QQ
Sbjct: 144 FPLQQNHHQQYQQ-HHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQY 202
Query: 376 QDSTEQPPQTNHHQETGQHH 317
Q Q Q Q +
Sbjct: 203 QHQNLQQQYQQQQQNLQQQY 222
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 427 CLRTSAPCAAIGTKLSGSGESIAKYIDENGGKYQNVIYLLEK 552
CL++S + + LSGSG++I Y +G +Q + +E+
Sbjct: 46 CLKSSKANTIVLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQ 87
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 368 HGAATTDQSPPGNWPTSPAPPRVQLATP*R 279
HG + D S P + PTSP P + + ATP R
Sbjct: 7 HGVQSGD-SKPSSPPTSPPPAQARHATPRR 35
>06_03_1008 +
26873805-26873891,26874038-26874107,26874237-26874334,
26874505-26874643,26874778-26874860,26875145-26875195,
26875305-26875370,26875465-26875530,26875637-26875717,
26876042-26876119,26876218-26876394,26876467-26876545,
26876752-26876870,26877029-26877430
Length = 531
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 400 YNQINQQRQDSTEQPPQTNHHQETGQH 320
Y QI QQ+Q T PPQT H Q+ Q+
Sbjct: 471 YYQIQQQQQMVT-LPPQTYHQQQQTQY 496
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 77 EMPSPLTQRQLRRRSLYTSLYYAT-RAIDEIASDMQTDRCRWSRSLLGHSFSMPPLSSSE 253
+MP P Q+RRR+ +S A+ R + + TD C W G ++ +S +
Sbjct: 1133 QMPLPPAPAQIRRRASSSSSSLASRRTVASPSWQNDTDCCTWEGITCGTDATITEISLAS 1192
Query: 254 RNDCGTVNFFKA 289
+ G ++ + A
Sbjct: 1193 KGLEGQISPYLA 1204
>01_03_0195 -
13674138-13674438,13674518-13674688,13674771-13675603,
13675685-13676146,13676225-13676958,13677047-13677176
Length = 876
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 344 SPPGNWPTSPAPPRVQ-LATP*RN*PCHSHSVLTKTTEAC*SYVPADSWTTGNGQSAYPK 168
S PG P SP P R+Q A P H T + +P D T+ +G+++ +
Sbjct: 2 STPGANPPSPTPARIQEEANPATEAVAEGHPATTAVQQPEIHELPQDQHTSMSGETSASR 61
Query: 167 LFHRSPW*RNI 135
R+P +NI
Sbjct: 62 -SSRNPRSQNI 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,057
Number of Sequences: 37544
Number of extensions: 385883
Number of successful extensions: 1580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -