Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d18
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-18|CAC70092.2|  191|Caenorhabditis elegans Hypothetical p...    28   1.8  
Z77654-6|CAB01128.3|  191|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   5.5  
Z66523-4|CAA91413.1|  429|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    26   9.7  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    26   9.7  

>Z77663-18|CAC70092.2|  191|Caenorhabditis elegans Hypothetical
           protein C50B8.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 103 WYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRW 228
           W  +L  + I+   +GL G+ L++  NY L  H R      W
Sbjct: 71  WLYLLVLMLIVLILLGLVGYLLYYIVNYILNRHDRYEEYRMW 112


>Z77654-6|CAB01128.3|  191|Caenorhabditis elegans Hypothetical
           protein C50B8.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 103 WYEILPTVAIITASIGLPGWGLWWCHNYFLGNHYRRSLTDRW 228
           W  +L  + I+   +GL G+ L++  NY L  H R      W
Sbjct: 71  WLYLLVLMLIVLILLGLVGYLLYYIVNYILNRHDRYEEYRMW 112


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 295 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYND 197
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 295 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYND 197
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 295 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYND 197
           LP  SLH+++Q   Y + T    +    S+YND
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYND 51


>Z66523-4|CAA91413.1|  429|Caenorhabditis elegans Hypothetical
           protein M05D6.4 protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 100 FFSRRINNSTTNDTYIINYFIQIKGAVMSHRP 5
           F   +INN T + T +   F+Q  GA+  + P
Sbjct: 267 FIKDKINNGTLSKTTVSTPFVQFVGAMTLNNP 298


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 121 TVAIITASIG--LPGWGLWWCHNYFL 192
           T+  + ++IG  L GW +W+  N+FL
Sbjct: 519 TICFLFSAIGINLYGWYIWYTENHFL 544


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 121 TVAIITASIG--LPGWGLWWCHNYFL 192
           T+  + ++IG  L GW +W+  N+FL
Sbjct: 519 TICFLFSAIGINLYGWYIWYTENHFL 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,513,411
Number of Sequences: 27780
Number of extensions: 135694
Number of successful extensions: 281
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)