Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d16
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.28
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 0.85
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 27 2.0
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 2.0
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 26 2.6
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 25 6.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.28
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 118 ENIEICEQDNRVFDVTQAQ-ELINKLEDYKCSSVDLEKQLLELETE 252
+N E + ++ + T Q ELIN LE K S + LEKQLLE E
Sbjct: 285 QNKEQSSEGSKTANQTHEQKELINSLEK-KVSDIALEKQLLEEAVE 329
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 184 NKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
NKL+ K SS LE+Q+ + +E+ + E+ES++
Sbjct: 859 NKLQIIKSSSSGLEEQMQRINSEISDKRNELESLE 893
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 339 FKASILSAPAATRSGGTLHGLHFDLDVPH 253
F SILS A +GG LH D DV H
Sbjct: 17 FHTSILSPRCAFHNGGILHKKAKDKDVKH 45
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 2.0
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +1
Query: 94 QDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRH 261
+++ + EN++ E+D+ DVT A L NK DY SV + + L ++++++
Sbjct: 340 EESEFMDSENVDD-EEDDDFLDVTTATSLQNKSTDY--GSVKRKTENLNSDSDIQN 392
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 172 QELINKLEDYKCSSVDLEKQLLELETEVR-HIQVEMESVK 288
++L N LE Y+ L+ QL+ LE ++R ++ E+ESVK
Sbjct: 17 RQLGNLLEQYEVEIARLKSQLV-LEKKLRIQVEKELESVK 55
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 109 ENHENIEICEQDNRVF-DVTQAQELINKLEDYKCSSVDLEKQLLELETE 252
++ +N ++D +V+ DV A++L + + LEKQLLE +++
Sbjct: 502 QSEDNFGARDEDWKVYHDVLTAEQLEEERKKLLDQIYSLEKQLLEYDSQ 550
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 97 PGXQRRRHPYFVHFFYNYFKIMYVCLKLFIF 5
P Q+R P F+H F ++ CL LF F
Sbjct: 91 PLSQKRPFPNFLHPFTGSELSLFRCLLLFFF 121
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 7.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -1
Query: 391 TRRTLSTXAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
+R+ S+ ++ ED KY RD+L+ + AP S TP S D+
Sbjct: 41 SRQLPSSTSKDEDSEEA-SHKYDFEIDRDSLKSDSGSPRLHQNATAPTSSTP-LQSPDES 98
Query: 211 TN 206
N
Sbjct: 99 VN 100
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +1
Query: 190 LEDYKCSSVDLEKQ-----LLELETEVRHIQVEMESVK 288
L D CSS+ L+++ L L+ ++ IQ+E+ES++
Sbjct: 326 LVDEACSSLRLQQESKPDELRRLDRQIMTIQIELESLR 363
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +1
Query: 121 NIEICEQDNRVFDVTQAQELINKLEDYKCS------SVDLEKQLLELETEVRHIQVE 273
N+ I + D + + + + + LE S++ EKQLL E E HI+++
Sbjct: 874 NVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLD 930
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,281
Number of Sequences: 5004
Number of extensions: 21506
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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