Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d16
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   1.8  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   1.8  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   1.8  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   1.8  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   1.8  
AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   3.1  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   4.1  
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    27   9.4  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 157 DVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 282
           D T+ +EL   L+D K    +L  ++LEL++E+  ++ +  S
Sbjct: 425 DTTELEELQKTLDDLKIDCCNLTSKMLELQSELVEVKEKATS 466


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 136 EQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESV 285
           EQ     D  + +E   K+ED +    DLE +L E E +++ +QV +E +
Sbjct: 524 EQATTAHDA-EIREFSIKMEDARRDIADLEAKLQEAEEKLKTVQVPVEMI 572


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 FDVTQAQELINKLEDYKCSSVDLEK 228
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 FDVTQAQELINKLEDYKCSSVDLEK 228
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical
           protein Y47D3A.5 protein.
          Length = 222

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -1

Query: 424 RSGCTWRDTADTRRTLSTXAEQ---EDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAA 254
           +SG T+ D AD R  L         + +R   +  +  RPRR        RTP R     
Sbjct: 27  KSGATYVDLADVRSQLPPPPPSVGPKGVRLAPKKPHQHRPRRQFRSVRLPRTPSRNSPLT 86

Query: 253 PRSLTP 236
           P + TP
Sbjct: 87  PPTKTP 92


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 379 LSTXAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 379 LSTXAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 404 GHGGHTPHALDXGGTGGPP 348
           GHGG  P   D  G GGPP
Sbjct: 793 GHGGPPPPHFDRRGGGGPP 811


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 175 ELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
           ++I   +DY   +VDLEKQ    E  +R     MESV+
Sbjct: 212 QMIRSEDDYVWQTVDLEKQRRMTENVLRKGVESMESVE 249


>Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 364 EQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           E++ +RR       +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 64  EEKPIRRKSHGNIRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 113


>Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 364 EQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           E++ +RR       +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 64  EEKPIRRKSHGNIRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 113


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 166  QAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
            + Q+ I+  +D+  +  +LEK    LE E+  ++V+ME ++
Sbjct: 1509 ELQDSISNKDDFGKNVHELEKAKRSLEAELNDMRVQMEELE 1549


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 165 CYIKYSIILFANFYIFMIFASVVL 94
           C I+ +II+  NF++FM +  +VL
Sbjct: 74  CSIRCAIIIVNNFFVFMYYIFLVL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,463,681
Number of Sequences: 27780
Number of extensions: 134920
Number of successful extensions: 610
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)