Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d14
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc... 42 6e-05
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 2.3
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.3
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 4.0
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 5.3
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.0
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 7.0
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.3
>SPCC1739.09c |cox13||cytochrome c oxidase subunit
VIa|Schizosaccharomyces pombe|chr 3|||Manual
Length = 130
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +1
Query: 322 YRNFTYFVLLPLIAIQSFNAL-------GHEPPPKGPCRDYEYMRVRTKRFPWGDGVKSF 480
++ TY++ P + + S NA H + Y + +R K++PWGDG K+
Sbjct: 57 WKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYPWGDGSKTL 116
Query: 481 YHNEHVNHLPGECE 522
+ N+ VNHL + E
Sbjct: 117 FWNDKVNHLKKDDE 130
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 141 TVEKARRYSLCGPPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVP 287
TVE+ ++ L PP P P P + VPP P PI P P
Sbjct: 720 TVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPP 764
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 165 SLCGPPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPR 290
S+ PP P+ G PP P V PP P P P VP+
Sbjct: 1146 SVAAPPVPAPSGAPPVP-KPSVAAPPV---PAPSSGIPPVPK 1183
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 410 GPFGGGSWPRALKLCIAIKG-NNTKYVKFLYFFPSVFTVVKSRNTG 276
GP + R L IA G N+ V F YF + TV SRN G
Sbjct: 156 GPLAKKTPERIRSLLIAESGCNDGMAVPFFYFAIKLLTVKPSRNAG 201
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -1
Query: 327 PVFFSKCLYRGEIEEHRDYNKSVQACN---QPVAR*LFHCQALEDSRICLDVVDH 172
P F S L+ HR SVQ N P+ FHC ED +C V H
Sbjct: 192 PQFLSAELFESASTVHR----SVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSH 242
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 350 NNTKYVKFLYFFPSVFTVVKS 288
++T ++F YF S+FTVV++
Sbjct: 214 SSTSAIEFAYFLDSIFTVVRT 234
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 103 LTLSI-NLKGH*FGQLKKPDATVFVVHHVQANAAVLQSLAVEKSSCHRLIASLDRFVIIP 279
L LSI + GH FG L V VH V+A + + LA H + +++ F ++P
Sbjct: 74 LPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRH-VYSAMTYFSLVP 132
Query: 280 VFLDFT 297
+ T
Sbjct: 133 LTFGVT 138
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -2
Query: 155 GFFN--CPNQWPFKFIDNVKAHILIVI 81
G FN PN+W F FI N+ LI +
Sbjct: 94 GLFNPKTPNKWKFLFILNIGVTALITV 120
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 144 VEKARRYSLCGPPRPSKCGCPPKPGSGKVI---VPPADCKPGPI 266
VE + + P S G P + S K VPPA+ KP P+
Sbjct: 288 VEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPV 331
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 481 YHNEHVNHLPGECEAPPLD 537
YH+E+VN++P +AP D
Sbjct: 236 YHHENVNYVPTIADAPLTD 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,907
Number of Sequences: 5004
Number of extensions: 57541
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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