Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d13
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    28   0.77 
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    27   1.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 396 RLRCRWCPATGT-TWCSGSPRSGSQYGSRARCGTRWRPSG 512
           R RCRWC   GT T+C      G++    A CG  +  +G
Sbjct: 369 RWRCRWCNVLGTGTFCVRRGPEGNKSLCNA-CGVAYAKTG 407


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 448 EPEHQVVPVAGHHRHLSLPE 389
           E EH ++  AGHH +L  PE
Sbjct: 387 EAEHHIISNAGHHCYLDNPE 406


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 26/134 (19%), Positives = 51/134 (38%)
 Frame = -1

Query: 486 SAHGNHTATPISASRNTRSCQLRDTTGTLVFQNSLRVSEARKQTISMSISARLIRPTRDW 307
           S+  + +++P S S    S     ++ T    +++  S +   + S ++S+  +  +  +
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTST-SSTISSSSSSSSSFSSTLSSSSMSSSSSF 332

Query: 306 CSCERSTDRGXXXXXXXXXXX*IPCLVTSVSWASSPSAEVPGRGDIMVHTLVSFRNSPRS 127
            S   S+                    +S   +SS S+ V         TL S  +S   
Sbjct: 333 SSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392

Query: 126 *RSKLSHTDHLSTH 85
             S  SH+  LS+H
Sbjct: 393 PASSSSHSSSLSSH 406


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 377  TLSEFWKTKVPV 412
            TL +FWKT VP+
Sbjct: 1113 TLDDFWKTPVPI 1124


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/23 (30%), Positives = 19/23 (82%)
 Frame = +2

Query: 299 QLHQSRVGLISLALMLILIVCFL 367
           +++++RVG+I L L ++++ C++
Sbjct: 43  KINKNRVGIIILFLYIMIVTCYV 65


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +2

Query: 362 FLASETLSEFWKTKVPVVSRNWHDLVFRLAEIGVAVWFPCALWN 493
           F   +   +FW T    + R W   V R +E    +     LWN
Sbjct: 713 FALEDMRDKFWDTMATRIQRAWRSYVRRRSEAAACIQ---KLWN 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,145
Number of Sequences: 5004
Number of extensions: 43288
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)