Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d13
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 31 0.44
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 30 1.3
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 29 2.3
01_05_0179 + 18973795-18973992,18974087-18974276,18974374-189745... 29 2.3
02_03_0129 - 15559017-15559901 29 3.1
04_03_0639 + 18247768-18248196 28 4.1
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843 28 5.4
05_06_0086 - 25447063-25447182,25448082-25448702 27 7.2
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 27 7.2
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412... 27 7.2
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 27 9.5
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 27 9.5
02_02_0317 + 8893593-8894207 27 9.5
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 27 9.5
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 LQLRGEFLKETKVCT-IISPRPGTSADGDEAQDTLVTKQGIQTDL 253
++L + ++ K C +++P PG S D D A D V K+G+ +++
Sbjct: 477 IELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEM 521
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +3
Query: 387 NSGRLRCRWCPATGTTWCSGSPRSGSQYGSRARCGTRWRP 506
N+G C W G WC + + G S A T RP
Sbjct: 290 NTGHKSCAWSAGLGQHWCGSADQLGLGKSSAASIATVSRP 329
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 517 PEPLGRHRVPQRAREPYCDPDLGEPEHQVVPVAGHHRH 404
P PL R + + PY EP P AG HRH
Sbjct: 115 PSPLARTVMTRADDHPYQSYSHSEPPSPAAPHAGDHRH 152
>01_05_0179 +
18973795-18973992,18974087-18974276,18974374-18974504,
18974948-18975053,18975661-18975727,18976632-18976698,
18977858-18977947
Length = 282
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 532 ARVQEPEPLGRHRVPQRAREPYCDPDLGEP 443
A+V+ +P R + R +PYC P GEP
Sbjct: 65 AKVRGSDPGARLELRFRPEDPYCHPAFGEP 94
>02_03_0129 - 15559017-15559901
Length = 294
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 274 GPSVRGPLAAAPVARGPDQPRADAH 348
GP+ GP A P A GP + A AH
Sbjct: 233 GPTADGPAADGPAADGPTEADAPAH 257
>04_03_0639 + 18247768-18248196
Length = 142
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 384 ANSGRLRCRWCPATGTTWCSGSPRSGSQYGSRARCG 491
A+ GRL G W SG+P G + ARCG
Sbjct: 12 ASRGRLAAAARGRRGVAWRSGAPAVGREATMLARCG 47
>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
Length = 588
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 334 EADQAHARL-VQLREVHGPRVHRSV-SVQQIRLNSLFSDKRILGFISVG*GSGTGRY 170
E D ARL V L ++ P+ R + SV+ L++ FSD+ +GF S T Y
Sbjct: 167 EYDAGDARLDVTLHQLTKPKPARPLLSVKPANLSAAFSDQMYVGFSSSTGSDDTSHY 223
>05_06_0086 - 25447063-25447182,25448082-25448702
Length = 246
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +1
Query: 271 GGPSVRGPLAAAPVARGPD---QPRADAHTDRLLPGF*NPKRILED*GAGGVPQLARPGV 441
GG V GP A A A G P ADA R L P AGG P+ + G
Sbjct: 81 GGSGVAGPCAEAAGAWGNGGVVSPCADAARQRPLNAAATPPLTRSPRPAGGSPRRSDRGS 140
Query: 442 PAR 450
P R
Sbjct: 141 PVR 143
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 182 PGTSADGDEAQDTLVTKQGIQTDLLDGDGTVD 277
PG D D+ +D L K G T LD DG+ D
Sbjct: 640 PGQVIDIDDGEDDLHGKSGDMTVDLDSDGSED 671
>05_01_0494 -
4120996-4121011,4121152-4121483,4122560-4122706,
4122818-4122871,4123203-4123367,4125516-4125827,
4125992-4126078,4126202-4126411
Length = 440
Score = 27.5 bits (58), Expect = 7.2
Identities = 24/78 (30%), Positives = 31/78 (39%)
Frame = +1
Query: 232 TGNSNGFAGRRRNGGPSVRGPLAAAPVARGPDQPRADAHTDRLLPGF*NPKRILED*GAG 411
+ +SNG A G +R A +AR PD D L P F +P+ +
Sbjct: 42 SSSSNGTAAALHPGEELLRLERVRAQLARSPDGDVIDCVPSHLQPAFEHPRLRGQ---KP 98
Query: 412 GVPQLARPGVPARRDRGR 465
P ARP RR R R
Sbjct: 99 EEPPSARPTETTRRRRRR 116
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 222 SVSWASSPSAEVPG 181
S+ W SSPS EVPG
Sbjct: 230 SIHWLSSPSGEVPG 243
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 259 RRRNGGPSVRGPLAAAPVARGPDQPRADAH 348
RR GG G LAAAP A P D H
Sbjct: 99 RRGAGGGVATGSLAAAPTAVSPGHAVVDQH 128
>02_02_0317 + 8893593-8894207
Length = 204
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 456 SGSQYGSRARCGTRWRPSG 512
+G + GSR CG RWRP G
Sbjct: 72 AGEESGSR--CGRRWRPGG 88
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -3
Query: 493 VPQRAREPYCDPDLGEPEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQYEH---QREADQ 323
+P + P L P+H+ P H +S P+ A + Q+ Q++H Q++ Q
Sbjct: 1 MPLQQTPPNVSAPLRPPQHRPHPRPYHAPAISHPQNALLTQQQQKLPQHQHLQQQQQQQQ 60
Query: 322 AHARLVQLREVHGPRVHRSVSVQQIRL 242
+L Q ++ ++ + QQ +L
Sbjct: 61 QQQKLQQQQQQQQQKLQQQQQQQQQKL 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,213
Number of Sequences: 37544
Number of extensions: 349393
Number of successful extensions: 1404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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