Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d13
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.      28   4.9  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    27   6.5  
Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    27   8.6  
AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen stru...    27   8.6  
AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen stru...    27   8.6  

>Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.12 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 308 QSRVGLISLALMLILIVCFLASETLSEFWKTKVPVVSRNWHDLVFRLAEIGVAVWFPCAL 487
           Q+ +G+ SL +M+  IV FL           K   + R W+ L+F      +A+ FP  +
Sbjct: 97  QNYMGVCSLEVMISTIVIFLEDRRYRLINGQKDSTL-RKWYRLLFATLHYALALTFPVPV 155

Query: 488 WNSM 499
           + S+
Sbjct: 156 YLSL 159


>U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical
           protein C17H11.6c protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 412 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLREVHGPRVHRS 266
           +RH+ L ++A     QE DD ++ Q  +D   +    +  + GP++  S
Sbjct: 550 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 598


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 412 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLREVHGPRVHRS 266
           +RH+ L ++A     QE DD ++ Q  +D   +    +  + GP++  S
Sbjct: 553 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 601


>U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical
           protein C17H11.6a protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 412 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLREVHGPRVHRS 266
           +RH+ L ++A     QE DD ++ Q  +D   +    +  + GP++  S
Sbjct: 550 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 598


>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 352 QYEHQREADQAHARLVQLREVHGP 281
           QY +QREAD   +RLVQ++    P
Sbjct: 252 QYNYQREADNRSSRLVQIQGHSAP 275


>Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 445 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 317
           PEHQ+  VA HH+H      +  ++   A   +  HQ +A Q H
Sbjct: 59  PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 102


>Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 445 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 317
           PEHQ+  VA HH+H      +  ++   A   +  HQ +A Q H
Sbjct: 59  PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 102


>Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical
           protein W06F12.1a protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 445 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 317
           PEHQ+  VA HH+H      +  ++   A   +  HQ +A Q H
Sbjct: 92  PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 135


>AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 445 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 317
           PEHQ+  VA HH+H      +  ++   A   +  HQ +A Q H
Sbjct: 92  PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 135


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 245 TDLLDGDGTVDPRSVDLSQLHQ-----SRVGLISLALMLILIVCFLASETLSEFWKTKVP 409
           T LL+   T D     LS L       S   +  ++L ++L++CF  +  +++ W T  P
Sbjct: 232 TALLENQTTFDTSMFSLSILKDEMQKNSTYTMPFISLTILLLLCFTVASCMTDNWVTSKP 291

Query: 410 V 412
           +
Sbjct: 292 I 292


>Z54238-5|CAA90997.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.6 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 241 SNGFAGRRRNGGPSVRGPLAAAPVARGPDQPRADAHTDRLLPGF*NPKRILED*GAGGVP 420
           ++G  G   N GPS  GP         P QP  DA ++ + PG   P       G  G P
Sbjct: 176 NDGQPGAPGNKGPS--GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233

Query: 421 QLARPG 438
              +PG
Sbjct: 234 --GQPG 237


>Z54238-3|CAA90995.1|  299|Caenorhabditis elegans Hypothetical
           protein T28C6.4 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 241 SNGFAGRRRNGGPSVRGPLAAAPVARGPDQPRADAHTDRLLPGF*NPKRILED*GAGGVP 420
           ++G  G   N GPS  GP         P QP  DA ++ + PG   P       G  G P
Sbjct: 176 NDGQPGAPGNKGPS--GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233

Query: 421 QLARPG 438
              +PG
Sbjct: 234 --GQPG 237


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 426 GTTWCSGSPRSGSQYGSRARCGTRW 500
           G  W    PR+G+  G +  C T W
Sbjct: 169 GVLWSPAEPRNGNWGGVQLNCATMW 193


>AY347576-1|AAP97870.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-3) protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 241 SNGFAGRRRNGGPSVRGPLAAAPVARGPDQPRADAHTDRLLPGF*NPKRILED*GAGGVP 420
           ++G  G   N GPS  GP         P QP  DA ++ + PG   P       G  G P
Sbjct: 176 NDGQPGAPGNKGPS--GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233

Query: 421 QLARPG 438
              +PG
Sbjct: 234 --GQPG 237


>AY347574-1|AAP97868.1|  299|Caenorhabditis elegans COLlagen
           structural gene, probablecuticle component, from embryo
           to adult (28.7 kD) (col-117) protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 241 SNGFAGRRRNGGPSVRGPLAAAPVARGPDQPRADAHTDRLLPGF*NPKRILED*GAGGVP 420
           ++G  G   N GPS  GP         P QP  DA ++ + PG   P       G  G P
Sbjct: 176 NDGQPGAPGNKGPS--GPNGNPGAPGAPGQPGQDAPSEPITPGAPGPAGPAGPQGPPGAP 233

Query: 421 QLARPG 438
              +PG
Sbjct: 234 --GQPG 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,959
Number of Sequences: 27780
Number of extensions: 262891
Number of successful extensions: 911
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)