Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d12
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    75   8e-15
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    39   7e-04
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    37   0.003
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.72 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.9  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.8  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   8.9  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.9  

>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
 Frame = +1

Query: 187 LPPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQRE 366
           LP K+   +N   +   KLD  + +E   Q  +    L++ +   +     K K V  R 
Sbjct: 32  LPNKEIEGKNEVIKNKNKLDNGNEIEP--QHLSQELVLQHALQDASSLP--KLKPV--RP 85

Query: 367 FMFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRACLIQSRETSNYH 540
           F  EK  +  V  + +Y GW Y GLA Q   T   TVE  +FEAL RA LI    + ++ 
Sbjct: 86  FQLEKTVF--VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFS 143

Query: 541 RCGRTDKGVSSFGQVISICLR 603
           RCGRTDKGVS+ GQVIS+ +R
Sbjct: 144 RCGRTDKGVSAMGQVISLNVR 164


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 376 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSN-----YH 540
           EK   R V   V Y G  Y G+ +    ++T+E  LF+A  +A  + S    +       
Sbjct: 39  EKKPKRKVACLVGYCGSGYHGMQLNP-PSKTIEGDLFDAFVKAGAVSSYNADDPKKVALA 97

Query: 541 RCGRTDKGVSSFGQVISICL 600
           R  RTDKGV + G VIS+ L
Sbjct: 98  RAARTDKGVHAAGNVISLKL 117


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
 Frame = +1

Query: 325 PCDGQKQKKVDQREFM--FEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALK 498
           P +  +  K+ +RE +   ++ +   +++ + Y G+ Y G+ +  N  +T+E  +   LK
Sbjct: 15  PAEDLETPKLPKREKIEGTKESNKVRIIILLGYSGYGYHGIQIN-NPLKTIEGDVVAVLK 73

Query: 499 RACLIQSRETSNYHRC----GRTDKGVSSFGQVISICL 600
           +   +++      H C     RTDKGV +   +IS+ L
Sbjct: 74  KLGYLKTNNIDAEHLCIARAARTDKGVHTLRNLISLNL 111


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 228 LSCCVPVNLLFWWQF-FHILTSLILLFQAHVVYFNTTLY 115
           L C VPV  L WW F FH L + I+   A+ + F  T Y
Sbjct: 542 LMCLVPVEPLRWWVFRFHSLNAGIIQ-AAYALCFPNTDY 579


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = -1

Query: 360 LVYFFLLLAIARCSFIYDVFQLCIMGLQLYYFLDEIIFVQL*KFLSCCVPVNLLFWWQFF 181
           L++FF LL     SF +  F   +  + + YF    I   L  F   CV V L F +   
Sbjct: 117 LLFFFFLLFFLSFSFSFS-FLFFLSQIFIVYFSSFPILHFL-FFFFLCVCVFLSFLFSLS 174

Query: 180 HILTSLILLFQAHVVYFNT 124
           H+L+  IL     +  F+T
Sbjct: 175 HLLSLAILFLPLLLRVFST 193


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 192 WQFFHILTSLILLFQAHVVYFNTTLYPRHS*YVHLNSHMYFNYEEE-KNSEQIVEM 28
           +Q    ++++ +  Q H + FNT LY R+     L S+ ++  E +  +  QI+EM
Sbjct: 267 YQLAQPISTVDMYAQVHYIRFNTLLYYRYQLQEILLSYNHYPQESDMSHVHQILEM 322


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 193 PKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKT 321
           P   +  N T+E+LL   +N L+E++ +LQA N +  + +  T
Sbjct: 614 PNCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 474 FYCLCCILLY 445
           FYCLCCIL Y
Sbjct: 486 FYCLCCILEY 495


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 332 SQGVVLFMMFFSCVLWACN----CIIFSTRSFLSNFKSSSLVAFRLIFCF 195
           SQ ++ F  FF C  ++ N    C++FS ++  S  K    +  +L++CF
Sbjct: 35  SQEILSF--FFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCF 82


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 558 VCTTTSVIIRGFTALYQTGPFQGFKKMIFYCLCCILLYSQTLIF 427
           + T  S I+R + A + T P   F     Y L C    S+ L+F
Sbjct: 58  IWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFLSEWLLF 101


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 514 QSRETSNYHRCGRTDKGVSSFGQVISI 594
           QSRET N H      KG   + QV+ +
Sbjct: 308 QSRETENLHNLLEQKKGEMVWAQVVEV 334


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 378 FKHKFSLVYFFLLLAIARCSFI 313
           F H    VYFFL L I   SF+
Sbjct: 56  FSHSLLFVYFFLTLIILLVSFM 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,608
Number of Sequences: 5004
Number of extensions: 61723
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)