Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d12
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 77 1e-14
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 42 4e-04
02_05_0250 + 27153048-27154453,27154546-27154885 40 0.002
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 30 1.3
05_02_0124 + 6849034-6851502 30 1.7
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 29 4.0
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 4.0
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 28 6.9
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 28 6.9
09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704... 28 6.9
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 27 9.2
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +1
Query: 382 CHYRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRA-CLIQSRETSNYHRCGRTD 558
C R + L++ Y G + G A + +T TVE +F+AL+RA L+ SR+ S Y RCGRTD
Sbjct: 89 CPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTD 148
Query: 559 KGVSSFGQVISICLRS 606
KGVS+ GQVIS+ LRS
Sbjct: 149 KGVSATGQVISLFLRS 164
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Frame = +1
Query: 373 FEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQTVEYHLFEAL-KRACLIQSR----ETS 531
+E + V+LRV Y+G EY+GL Q + T+E L A+ K +++S +
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 532 NYHRCGRTDKGVSSFGQVISI 594
+ R RTDKGV S +IS+
Sbjct: 126 GWERSSRTDKGVHSLATMISL 146
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +1
Query: 391 RHVLLRVSYLGWEYQGLAVQENT-TQTVEYHLFEALKRACLIQSRETS-----NYHRCGR 552
R V + + Y G YQG+ Q+N +T+E L EAL RA + + + ++ R R
Sbjct: 49 RKVAILLGYCGAGYQGM--QKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAAR 106
Query: 553 TDKGVSSFGQVIS 591
TDKGVS+ QV+S
Sbjct: 107 TDKGVSAAAQVVS 119
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 30.3 bits (65), Expect = 1.3
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Frame = +1
Query: 319 TTPCDGQKQKKVDQ-REFMFEKCHYRHVLLRVSYLGWEYQGLAVQE--NTTQ-TVEYHL- 483
T P + Q K + R +E+ ++ VL SY G + G Q NT Q VE HL
Sbjct: 99 TAPSENQTSTKSSKDRGGRWERVTFKIVL---SYHGGSFDGWQKQPGLNTVQGLVEKHLG 155
Query: 484 -FEALKRACLIQSRETSNYHRC----GRTDKGVSSFGQVIS 591
F K+A +++R C GRTDKGV++ QV S
Sbjct: 156 QFVDEKKAKQLEARSLP-LEGCAVVAGRTDKGVTALQQVCS 195
>05_02_0124 + 6849034-6851502
Length = 822
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 481 LFEALKRACLIQSRETSNYHRCGRTDKGVSS--FGQVIS 591
L+E +C+ + R+ HR GR D G+SS F +IS
Sbjct: 420 LYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLIS 458
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +1
Query: 190 PPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREF 369
P K+ ++ + + D N+ + +I A NT+ N++++ C+ Q + + E
Sbjct: 338 PAKEWKPKSTKKSSNIDTDNNNGTD-VITTSASNTENSNVLDENALCEKTSQACIHEVEH 396
Query: 370 MFEKCHYRHVLLRVSYLGWEYQGLAVQENTTQTVE 474
+ H LRV +E GL+VQE VE
Sbjct: 397 VIIPEH-----LRVP--EYEQTGLSVQEPVQLVVE 424
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 386 WHFSNINSLWSTFFCFWPSQGVVLFMMFFSCVL 288
W F + +L + F FW + V+ M F SC+L
Sbjct: 335 WEFLRLKALLA--FMFWGAPAVISIMTFASCIL 365
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 438 TLIFPAKVRYP*EDMTIMAFFKHKFSLVYFFL--LLAIARCSFIYDVFQLCIMGLQLYYF 265
T I P ++R + + + F F + FL L I +F + +C+M + +Y+F
Sbjct: 417 TEICPLEIRSAGQSIVVAVVFLMTFVIGQTFLAVLCRIKSGTFFFFAGWICLMTVFVYFF 476
Query: 264 LDEIIFVQL*KFLSCCVPVNLLFW 193
L E + + + C V+ W
Sbjct: 477 LPETKKLPMEQMEQCVEVVSCRDW 500
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 345 LLLAIARCSFIYDVFQLCIMGLQLYYFLD 259
+ L ++ C F+Y + + I+GL YY LD
Sbjct: 345 MCLTLSLCCFLYMMVSIVIVGLVPYYALD 373
>09_02_0296 +
7041463-7042351,7042450-7042606,7042758-7042839,
7043082-7043120
Length = 388
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +1
Query: 250 NDLVEKIIQLQAHNTQLKNIINKTTPCDG----QKQKKVD---QREFMFEKCHYRHVLLR 408
ND + +L+ H T +++N T + QK + +D QR+ EK H+R VL R
Sbjct: 123 NDWLHLSSRLREHETSPDHVLNMTNWYELRNRLQKDQTIDKSAQRQLKKEKDHWRKVLFR 182
Query: 409 V 411
+
Sbjct: 183 I 183
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 220 TREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQRE 366
T EEL K N +KI+ H T K +N T ++ K +D+++
Sbjct: 440 TEEELQKATNNFDEKKILGHGGHGTVYKGFLNGNTEVAIKRCKTIDEQQ 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,635
Number of Sequences: 37544
Number of extensions: 348399
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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