Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d12
(624 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004822-1|AAH04822.1| 481|Homo sapiens pseudouridylate synthas... 120 4e-27
AK055702-1|BAB70990.1| 481|Homo sapiens protein ( Homo sapiens ... 120 4e-27
BC019320-1|AAH19320.2| 427|Homo sapiens pseudouridylate synthas... 46 8e-05
BC009505-1|AAH09505.2| 427|Homo sapiens pseudouridylate synthas... 46 8e-05
BC002901-1|AAH02901.1| 399|Homo sapiens pseudouridylate synthas... 46 8e-05
AF116238-1|AAD21042.1| 365|Homo sapiens pseudouridine synthase ... 46 8e-05
AB018258-1|BAA34435.2| 1498|Homo sapiens KIAA0715 protein protein. 30 5.8
AF509494-1|AAM34297.1| 936|Homo sapiens hypothetical protein pr... 30 7.6
AB037828-1|BAA92645.1| 744|Homo sapiens KIAA1407 protein protein. 30 7.6
>BC004822-1|AAH04822.1| 481|Homo sapiens pseudouridylate synthase 3
protein.
Length = 481
Score = 120 bits (289), Expect = 4e-27
Identities = 66/134 (49%), Positives = 88/134 (65%)
Frame = +1
Query: 208 NRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREFMFEKCH 387
+RN T E+LLK + +L +++ +L+ + K N G + K R F F
Sbjct: 7 DRNQT-EKLLKRVR-ELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTK---RAFDFSAHG 61
Query: 388 YRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGV 567
RHV LR++Y+GW YQG A QENT T+E LFEAL + L++SR+TSNYHRCGRTDKGV
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGV 121
Query: 568 SSFGQVISICLRSK 609
S+FGQVIS+ LRS+
Sbjct: 122 SAFGQVISLDLRSQ 135
>AK055702-1|BAB70990.1| 481|Homo sapiens protein ( Homo sapiens
cDNA FLJ31140 fis, clone IMR322001218, highly similar to
Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
Length = 481
Score = 120 bits (289), Expect = 4e-27
Identities = 66/134 (49%), Positives = 88/134 (65%)
Frame = +1
Query: 208 NRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKVDQREFMFEKCH 387
+RN T E+LLK + +L +++ +L+ + K N G + K R F F
Sbjct: 7 DRNQT-EKLLKRVR-ELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTK---RAFDFSAHG 61
Query: 388 YRHVLLRVSYLGWEYQGLAVQENTTQTVEYHLFEALKRACLIQSRETSNYHRCGRTDKGV 567
RHV LR++Y+GW YQG A QENT T+E LFEAL + L++SR+TSNYHRCGRTDKGV
Sbjct: 62 RRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGV 121
Query: 568 SSFGQVISICLRSK 609
S+FGQVIS+ LRS+
Sbjct: 122 SAFGQVISLDLRSQ 135
>BC019320-1|AAH19320.2| 427|Homo sapiens pseudouridylate synthase 1
protein.
Length = 427
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 376 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 534
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 535 YHRCGRTDKGVSSFGQVISI 594
+ RC RTDKGVS+ GQV+S+
Sbjct: 139 FQRCARTDKGVSAAGQVVSL 158
>BC009505-1|AAH09505.2| 427|Homo sapiens pseudouridylate synthase 1
protein.
Length = 427
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 376 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 534
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 79 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 138
Query: 535 YHRCGRTDKGVSSFGQVISI 594
+ RC RTDKGVS+ GQV+S+
Sbjct: 139 FQRCARTDKGVSAAGQVVSL 158
>BC002901-1|AAH02901.1| 399|Homo sapiens pseudouridylate synthase 1
protein.
Length = 399
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 376 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 534
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 51 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 110
Query: 535 YHRCGRTDKGVSSFGQVISI 594
+ RC RTDKGVS+ GQV+S+
Sbjct: 111 FQRCARTDKGVSAAGQVVSL 130
>AF116238-1|AAD21042.1| 365|Homo sapiens pseudouridine synthase 1
protein.
Length = 365
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 376 EKCHYRHVLLRVSYLGWEYQGLAVQENTTQ--TVEYHLFEALKRA-CLIQSR----ETSN 534
EK R ++L ++Y G Y G+ ++Q T+E L AL R+ C+ ++ +
Sbjct: 17 EKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMS 76
Query: 535 YHRCGRTDKGVSSFGQVISI 594
+ RC RTDKGVS+ GQV+S+
Sbjct: 77 FQRCARTDKGVSAAGQVVSL 96
>AB018258-1|BAA34435.2| 1498|Homo sapiens KIAA0715 protein protein.
Length = 1498
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 210 VNLLFWWQFFHILTSLILLFQAHVVYFN 127
VNLLFW+QFF +S ++ +++FN
Sbjct: 1161 VNLLFWYQFFCGFSSSTMIDYWQMIFFN 1188
>AF509494-1|AAM34297.1| 936|Homo sapiens hypothetical protein
protein.
Length = 936
Score = 29.9 bits (64), Expect = 7.6
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 175 DMEKLPPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKV 354
+ +K ++K+ + +EE + K + EK QL+ + + + K + QK+ K
Sbjct: 677 EKKKKQEEEKLAQLKAQEE--ERQKREAEEKEAQLERKREEKR--LKKMKELEKQKRIKR 732
Query: 355 DQREFMFEKCHYRHVLLRVSYL-GWEYQGLAVQENTTQTVEYHLFEALKRACLI 513
+Q+ K HY VLLR L W+ + ++N Q E H L+R ++
Sbjct: 733 NQQLEAIAKEHYERVLLRKKGLEPWKRLRMQSKQN-IQVAEEHYSLFLQRKYML 785
>AB037828-1|BAA92645.1| 744|Homo sapiens KIAA1407 protein protein.
Length = 744
Score = 29.9 bits (64), Expect = 7.6
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 175 DMEKLPPKQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCDGQKQKKV 354
+ +K ++K+ + +EE + K + EK QL+ + + + K + QK+ K
Sbjct: 485 EKKKKQEEEKLAQLKAQEE--ERQKREAEEKEAQLERKREEKR--LKKMKELEKQKRIKR 540
Query: 355 DQREFMFEKCHYRHVLLRVSYL-GWEYQGLAVQENTTQTVEYHLFEALKRACLI 513
+Q+ K HY VLLR L W+ + ++N Q E H L+R ++
Sbjct: 541 NQQLEAIAKEHYERVLLRKKGLEPWKRLRMQSKQN-IQVAEEHYSLFLQRKYML 593
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,082,678
Number of Sequences: 237096
Number of extensions: 2061765
Number of successful extensions: 4155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4155
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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