Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d11
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643...    30   1.4  
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    29   4.2  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   4.2  
02_04_0658 - 24793219-24794109                                         28   5.5  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    28   7.3  
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    27   9.7  

>01_01_0826 +
           6431621-6431917,6432356-6432505,6432614-6432796,
           6433305-6433385,6433548-6433586,6433646-6433849,
           6433933-6434073,6434270-6434437,6434498-6434518
          Length = 427

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +2

Query: 326 SKNIYEVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSP 505
           S+ +  +  + +L R   N  +A     L VVT   K  L     + E  +R   L++ P
Sbjct: 259 SEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMP 318

Query: 506 GSMKEKKMISNENILANLLR 565
           G +   + +S+  +L +LL+
Sbjct: 319 GGLPGAQKLSSTKVLVDLLK 338


>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 427 ESYDQ*EQREPSNYIVLFDTTQQD*FFDLVNVFRKYQPYDVLKRNVHAMVDDSSKISE 254
           E  D  E R    Y + +D   +D  FD V +   ++P D       AM ++SSK S+
Sbjct: 278 EDLDLLEGRSNKQYAIYYDEPIRDEMFDNVLLCSDHKPLDEGVSLSRAMTNNSSKSSQ 335


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 427 RGKSFAFVHGKSG*NMQKERTFGALSGVDEREKNDFK 537
           +GK  AF+HG  G   QKER     + + ++EK+D K
Sbjct: 214 KGK-LAFLHGGGGQKAQKERAAALAAILAKKEKDDSK 249


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +2

Query: 308 IIRLIFSKNIYEVEKLI---LLSRVEKNYIIAGFSLFLLVVT-FAVKALLSYTASLAEIC 475
           I+ L+ S   Y +  +I    L +++ + ++AGFS+ LL  + F++K L  Y  + +   
Sbjct: 61  IVALVVSTWTYTLNLVIDEVTLLKLDTSLLLAGFSMLLLTASPFSLKLLSKYVLNTSFFI 120

Query: 476 RRSEPLVLSPGSMKEKKMISNENILA 553
             S   VL+P      + IS+++I A
Sbjct: 121 --SGLYVLAPIYQTLTRSISSDSIWA 144


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 145 NDPVVGYAKSYLRCPSRHPQYQL 213
           +DPV+   +  LRC +RH +Y+L
Sbjct: 460 SDPVIAAMEDILRCGTRHMRYRL 482


>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 344 VEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRR 481
           VEK++ L   E+N +  GF L LL    A   L +  AS AE+ RR
Sbjct: 266 VEKIVSLLPAERNAVSCGFLLKLLK---AANILGASPASKAELTRR 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,865
Number of Sequences: 37544
Number of extensions: 283490
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)