Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d11
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    31   0.70 
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   4.9  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   4.9  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   4.9  
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl...    28   4.9  
Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 197 IHNINCFTKYFKKYYIIGIFAYFATI---IYHGMYIPLQNIIRLIF 325
           IHN N    YF    +   F YF TI   IY GMY  L  II + F
Sbjct: 63  IHNFNGSLTYFSHTILSEDFLYFWTIFIDIYGGMYCSLITIIAVQF 108


>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
           protein R01E6.1 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 491 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIK 640
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK
Sbjct: 816 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIK 864


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 515 SSTPERAPKVRSFCIFQPDLPCTKAKLLPRKLRPIRTERTQQLYSSFRHDSARLVFRPRK 336
           S+TP+R   +     F P   C + +       P+RT R   L  S   + A  V +P+K
Sbjct: 351 SNTPDRPILMEDSADFTPSSRCEERRGSGDGREPVRTIRCGDLERSENDEPAEKVVKPKK 410


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 479  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 607
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 479  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 607
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1448 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1490


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 479  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 607
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 491 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIK 640
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK
Sbjct: 819 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIK 867


>Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 VEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMK 517
           + + +     EKN I+    + LLV T A+  ++    +L  +   S PLV+S G+ K
Sbjct: 64  IAQAVARRNTEKNRILRDCGV-LLVATAALAIMIYLLLTLLGLSMPSRPLVVSKGAAK 120


>Z79604-6|CAB97241.2|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 344 VEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMK 517
           + + +     EKN I+    + LLV T A+  ++    +L  +   S PLV+S G+ K
Sbjct: 64  IAQAVARRNTEKNRILRDCGV-LLVATAALAIMIYLLLTLLGLSMPSRPLVVSKGAAK 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,847
Number of Sequences: 27780
Number of extensions: 285902
Number of successful extensions: 611
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)