Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d09
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    35   0.057
03_01_0019 + 167900-168343,168567-168751,169076-169430                 32   0.31 
04_03_0239 + 13205509-13206090                                         30   1.2  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           28   6.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   6.6  
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406...    27   8.7  
08_01_0421 - 3735155-3736067,3736154-3736176                           27   8.7  
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743...    27   8.7  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = -3

Query: 373 PDSFVPIAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSP---APP 203
           P+   P+ A  + VR   P P  +      P  +  H  A T   PP   P  P   AP 
Sbjct: 114 PEELSPVGAPRSRVRAMPPSPSLSP-----PAKAPSHSHAKTPSMPPAERPALPPTKAPA 168

Query: 202 RVQLATP*RN*PCHSHS 152
            +  ATP +  P ++HS
Sbjct: 169 AISPATPPQLSPANAHS 185


>03_01_0019 + 167900-168343,168567-168751,169076-169430
          Length = 327

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 355 IAAHGAEVRRQQPKPRRALV*SN*PTTSGQHGAATTDQSPPGNWPTSPAPP 203
           +AAHG   +  +PKP    +  N  ++S  + +  +   P    PT+P PP
Sbjct: 23  LAAHGCSAKHHKPKPTPGGISGN-ASSSSSNSSTPSIPPPVAPTPTAPTPP 72


>04_03_0239 + 13205509-13206090
          Length = 193

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 183 GVAN*TRGGAGDVGQFPGGDWSVVAAPC 266
           G A+  RGG+G   QF GG   VVAA C
Sbjct: 38  GRADPVRGGSGGADQFRGGGDDVVAARC 65


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 482 LFEIMKLNLGLLKFEFVCENRLNC 553
           +F+I+KL LG++K EF+   ++ C
Sbjct: 97  IFKIIKLKLGIVKLEFIVYLKIIC 120


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = -1

Query: 447 FPTNKSRFDIFRHFHQYTSQ*IRQSRIVLSQ*RRTEL--RYADNSQNHDEHWYNQINQQR 274
           FP  ++    ++  H +  Q   Q+RI     R+ +   ++  ++QNH +  Y Q  QQ 
Sbjct: 144 FPLQQNHHQQYQQ-HHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQY 202

Query: 273 QDSTEQPPQTNHHQETGQHH 214
           Q    Q       Q   Q +
Sbjct: 203 QHQNLQQQYQQQQQNLQQQY 222


>08_02_1311 -
           26039741-26039930,26040185-26040316,26040528-26040676,
           26040807-26040893,26041338-26041420,26042008-26042137
          Length = 256

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 324 CLRTSAPCAAIGTKLSGSGESIAKYIDENGGKYQNVIYLLEK 449
           CL++S     + + LSGSG++I  Y   +G  +Q  +  +E+
Sbjct: 46  CLKSSKANTIVLSGLSGSGKTILFYQLRDGSTHQGTVTSMEQ 87


>08_01_0421 - 3735155-3736067,3736154-3736176
          Length = 311

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 265 HGAATTDQSPPGNWPTSPAPPRVQLATP*R 176
           HG  + D S P + PTSP P + + ATP R
Sbjct: 7   HGVQSGD-SKPSSPPTSPPPAQARHATPRR 35


>06_03_1008 +
           26873805-26873891,26874038-26874107,26874237-26874334,
           26874505-26874643,26874778-26874860,26875145-26875195,
           26875305-26875370,26875465-26875530,26875637-26875717,
           26876042-26876119,26876218-26876394,26876467-26876545,
           26876752-26876870,26877029-26877430
          Length = 531

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 297 YNQINQQRQDSTEQPPQTNHHQETGQH 217
           Y QI QQ+Q  T  PPQT H Q+  Q+
Sbjct: 471 YYQIQQQQQMVT-LPPQTYHQQQQTQY 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,912
Number of Sequences: 37544
Number of extensions: 325814
Number of successful extensions: 1247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)