Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d09
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.14 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.44 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 324 NSQNHDEHWYNQINQQRQDSTEQPPQTNHHQETGQHH 214
           N  N D + YN  + Q + S++   Q N+      HH
Sbjct: 416 NFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 327 DNSQNHDEHWYNQINQQRQDSTEQPPQTNHHQETGQHH 214
           DN QN +    N+ N  RQ+  +     N+  +   HH
Sbjct: 502 DNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHH 539


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 285 NQQRQDSTEQPPQTNHHQETGQHHLRLLVFN*PRLKEIN 169
           +Q  QD  ++  + NHH       L  L       KE+N
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVN 89


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 309 DEHWYNQINQQRQDSTEQPPQT 244
           D HW  + N Q+ +  E+ P T
Sbjct: 796 DNHWILRSNVQQCEQLEKAPNT 817


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,222
Number of Sequences: 438
Number of extensions: 2864
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)