Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d08
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150... 44 1e-04
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 40 0.001
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 36 0.029
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 30 1.9
02_05_1046 - 33740809-33741201,33741359-33741511,33741583-337424... 29 2.5
02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209 29 2.5
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 4.3
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 28 5.7
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 28 7.6
04_04_0131 - 22976155-22976325,22977560-22977653,22977835-22978202 28 7.6
>04_03_0818 +
20014685-20014687,20014792-20014831,20014988-20015025,
20015359-20015485,20015571-20015797,20015919-20016064,
20016166-20016284,20016711-20016799,20016881-20017003,
20017123-20017158,20017464-20017562,20017642-20017833
Length = 412
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +2
Query: 209 LKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLEL 388
L + G +AWL P +S + GY + Y + YGS+ D + LL+K E N++ + ++
Sbjct: 49 LAQSGFTSAWLPPPTQSLSPE-GYLPQNLYCLDSCYGSLHDLQALLRKMKEHNVRAMADV 107
Query: 389 VPNH 400
V NH
Sbjct: 108 VINH 111
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 20/95 (21%)
Frame = +2
Query: 194 TRLDYLKELGVDAAWLSPIFK----------SAMHDFGYDTTDYYTIQPEYGS------- 322
++LDYLKELGV+ L P + S M+ +GY T ++++ Y S
Sbjct: 274 SKLDYLKELGVNCVELMPCHEFNELEYFSCSSKMNFWGYSTINFFSPMIRYSSGGIRNCG 333
Query: 323 ---MEDFEHLLKKANELNIKIVLELVPNHTSNESE 418
+ +F+ +++A++ I++++++V NHT+ +E
Sbjct: 334 RDAINEFKTFVREAHKRGIEVIMDVVFNHTAEGNE 368
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 35.9 bits (79), Expect = 0.029
Identities = 12/42 (28%), Positives = 30/42 (71%)
Frame = +2
Query: 281 DTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLELVPNHTS 406
+ T+Y+++ +GS +DF+ L+ +A+ L + ++L++V ++ S
Sbjct: 491 EVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVHSYAS 532
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 197 RLDYLKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQP-EYGSMEDFEHLLKKANELNIK 373
++D + G+ WL P +S GY Y + +YG+ + L++ + ++
Sbjct: 50 KVDDIAAAGITHVWLPPPSQSVAEQ-GYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 108
Query: 374 IVLELVPNHTSNE 412
++ ++V NH + E
Sbjct: 109 VIADIVINHRTAE 121
>02_05_1046 -
33740809-33741201,33741359-33741511,33741583-33742461,
33742622-33742630
Length = 477
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = -3
Query: 465 NQSL*YSSLFDDFKNHSLSLLV*FGTSSRTILIFSSLAFLRRCSKSSID 319
N+S+ + S +DFK+H+LS+L F S L+ AF++R + +++
Sbjct: 369 NKSVEWESSAEDFKHHNLSVLTIFCFQSEDFLV----AFIKRIMEVAVN 413
>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
Length = 455
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 465 NQSL*YSSLFDDFKNHSLSLLV*FGTSS 382
N++ +++ DFKNHSLS LV FG S
Sbjct: 345 NKNADWNASASDFKNHSLSTLVMFGFQS 372
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 197 RLDYLKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQP-EYGSMEDFEHLLKKANELNIK 373
++D + G+ WL P S + + GY Y + +YG+ + L++ + ++
Sbjct: 50 KVDDIAAAGITHVWLPPPSHS-VGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 108
Query: 374 IVLELVPNHTSNE 412
++ ++V NH + E
Sbjct: 109 VIADIVINHRTAE 121
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 194 TRLDYLKELGVDAAWLSPIFKSAMHDFGYDTTDYYTIQP-EYGSMEDFEHLLKKANELNI 370
+ +D + GV WL P S GY Y + +YG+ + L+ + +I
Sbjct: 50 SHVDDIAATGVTHVWLPPPSHSVAPQ-GYMPGRLYDLDASKYGTGAELRSLIAAFHSKSI 108
Query: 371 KIVLELVPNH 400
K V ++V NH
Sbjct: 109 KCVADIVINH 118
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 281 DTTDYYTIQPEYGSMEDFEHLLKKANELNIKIVLELVPNHTSN 409
DT + + ++G +E+FE L++KA E + + L + NH S+
Sbjct: 463 DTLFFGNLCKDWG-IEEFEELIRKALEDVVSVDLAMARNHDSS 504
>04_04_0131 - 22976155-22976325,22977560-22977653,22977835-22978202
Length = 210
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 358 IGFFEKMLKILHRSIFWLY 302
+GFF++ I+H FWLY
Sbjct: 57 LGFFKEKASIMHAKSFWLY 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,152
Number of Sequences: 37544
Number of extensions: 374957
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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