Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d07
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0357 - 2816650-2817897                                           28   4.1  
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     28   5.4  
08_01_0931 + 9177466-9177493,9178205-9178317,9178418-9178759,917...    27   7.1  
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174     27   7.1  
04_03_0215 + 12722394-12722581,12722992-12723071,12723315-127235...    27   7.1  
03_05_0760 - 27505860-27506148,27507647-27508580,27508677-275087...    27   7.1  
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350...    27   7.1  

>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +1

Query: 211 GNGTAACWRRENRRCDAESYHY-------HGIGKRGTRVRRGLALGDIFFRDATRDLFNK 369
           G+G AA WRR+      E  +Y       HG+G+RG+      + G +F  D  + +  K
Sbjct: 308 GDGAAA-WRRDVIWMPTEVSNYPKSYTMAHGLGRRGSVAMMYSSTGAVFVLDLDKKVMEK 366

Query: 370 RLPEQCKPYESSFSDGCPPVDW 435
            + +   P     S   PPV +
Sbjct: 367 AM-DCLLPLRMDHSLDRPPVPY 387


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 TDSCPDVGYYFKRELPSNYLDPGPCFLCFCQGN-GTAACWRRENRRCDAESYHYHGIGKR 294
           +D C D+     R+L   Y +  PC    CQ   G+  C  ++ ++ D   Y        
Sbjct: 300 SDGCQDIDECEMRKLDPKYEELYPCRKGVCQNTPGSYICKCKKGKKSDGTGYGCQPADSP 359

Query: 295 GTRVRRGLALGDI 333
             R+  GL++  I
Sbjct: 360 DYRMVVGLSVSAI 372


>08_01_0931 +
           9177466-9177493,9178205-9178317,9178418-9178759,
           9178935-9179139,9179322-9179344
          Length = 236

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 472 RWRRSHRRYNRCTNQLEDSHR*SWIHTACIAPVIA 368
           RW R   R  R    L+ + R  W  T  +AP++A
Sbjct: 60  RWLRCRWRQGRAAASLDLTVRADWRRTTAVAPLVA 94


>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
          Length = 514

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 476 CPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSGNRLLKRSLVASRKNMSPKARP 312
           CPL+ Q+  ++ +H  +  QP+  L   GL+ +G     ++   S     P   P
Sbjct: 23  CPLSGQA-ALEYLHYLSRAQPTRSLTGAGLYSAGKSFSTQAATTSSTPQPPPPPP 76


>04_03_0215 +
           12722394-12722581,12722992-12723071,12723315-12723532,
           12724084-12724168,12724679-12724725,12725378-12725536
          Length = 258

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 227 HVGEERIEDVMLKATTIMGSESGAQGCAVVLP*ETYSFVMRPG 355
           H+G   + D++L+   +   ESG +G  V++   +Y    R G
Sbjct: 88  HLGHFLLTDLLLEKMKVTAIESGIEGRVVIVASNSYKHPYREG 130


>03_05_0760 -
           27505860-27506148,27507647-27508580,27508677-27508792,
           27508876-27508945,27509027-27509183
          Length = 521

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 350 VASRKNMSPKARPRRTLVPR 291
           V S +NMSP++ P+RTL+ R
Sbjct: 179 VTSLENMSPESEPQRTLLSR 198


>01_01_0476 +
           3505799-3506479,3506639-3506897,3508427-3508550,
           3508922-3509030
          Length = 390

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 134 MLATISNENYRQIIWILDHASSASVRVMARLHVGEERIEDVMLKATTIMGSESGAQGC 307
           +L  I  ++  + +  L H S+ SV     +H G  R+E   LK T ++ +      C
Sbjct: 137 LLHQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISC 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,849,534
Number of Sequences: 37544
Number of extensions: 366561
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)