Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d07
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical pr... 30 1.2
AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein. 30 1.2
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 2.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 29 2.7
L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid desa... 28 3.6
AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical ... 28 3.6
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 28 3.6
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 28 3.6
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 28 3.6
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 27 6.3
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 27 6.3
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 25 7.7
Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 8.4
>Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical
protein T15D6.2 protein.
Length = 420
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 84 LSSHQSWYQEGQHQHVESPSC 22
+S HQ W++ G H H++ SC
Sbjct: 323 ISRHQIWFESGCHNHMKDGSC 343
>AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein.
Length = 420
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 84 LSSHQSWYQEGQHQHVESPSC 22
+S HQ W++ G H H++ SC
Sbjct: 323 ISRHQIWFESGCHNHMKDGSC 343
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 382 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 486
QCK S +GC + G +C A+GH C
Sbjct: 1831 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1865
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 382 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 486
QCK S +GC + G +C A+GH C
Sbjct: 1831 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1865
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 382 QCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWDC 486
QCK S +GC + G +C A+GH C
Sbjct: 1850 QCKKSHFSTINGCVKCECGFGADSTECSADGHCKC 1884
>L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid
desaturase protein.
Length = 402
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 484 SPSARWRRSHRRYNRCTNQLEDSHR*SWI 398
SP W++SH+ ++ TN ++ H WI
Sbjct: 150 SPYFPWQKSHKLHHAFTNHIDKDHGHVWI 178
>AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical
protein Y67H2A.8 protein.
Length = 402
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 484 SPSARWRRSHRRYNRCTNQLEDSHR*SWI 398
SP W++SH+ ++ TN ++ H WI
Sbjct: 150 SPYFPWQKSHKLHHAFTNHIDKDHGHVWI 178
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 77 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 247
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 248 EDV 256
E V
Sbjct: 110 EAV 112
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 77 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 247
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 248 EDV 256
E V
Sbjct: 110 EAV 112
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 77 LLSTCQTQTIRSNKQIPV---PMLATISNENYRQIIWILDHASSASVRVMARLHVGEERI 247
LL+ T+T N P+ +L I NEN I +LDH ++ +GEE +
Sbjct: 52 LLAGISTETFNINCLDPLGRNALLIAIENENIEMIELLLDHNIETGDAIL--YAIGEENV 109
Query: 248 EDV 256
E V
Sbjct: 110 EAV 112
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 488 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 375
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 488 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 375
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 488 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 375
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 488 LQSQCPLASQSQTVQPMHQSTGGQPSLKLDSYGLHCSG 375
LQ P++SQSQ P+ G QP + + C G
Sbjct: 336 LQLATPMSSQSQQTFPIPSPLGSQPQQQQPMGPIQCQG 373
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 24.6 bits (51), Expect(2) = 7.7
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 370 RLPEQCKPYESSFSDGCPPVDWCIGCT--VCDCDA 468
R QC P + + D P C G +CDC+A
Sbjct: 122 RSTPQCVPEKDCYKDSECPSGKCFGSELGLCDCNA 156
Score = 21.0 bits (42), Expect(2) = 7.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1
Query: 460 CDANGHWDC 486
CD+NG+ DC
Sbjct: 176 CDSNGNCDC 184
>Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical
protein W09H1.1b protein.
Length = 395
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 322 RQDHGAPLCPAFRSHDSGSFQHHIFYSLFANMQPC 218
RQ+ G CP F + S F++++ YSL Q C
Sbjct: 245 RQNRGFE-CPCFCNRSSSHFRYYLSYSLPETEQRC 278
>Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical
protein W09H1.1a protein.
Length = 396
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 322 RQDHGAPLCPAFRSHDSGSFQHHIFYSLFANMQPC 218
RQ+ G CP F + S F++++ YSL Q C
Sbjct: 246 RQNRGFE-CPCFCNRSSSHFRYYLSYSLPETEQRC 279
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 136 VGYYFKRELPSNYLDPGPCFLC 201
+GYY LP +L+ G C +C
Sbjct: 278 IGYYTPEGLPKKHLEDGVCAVC 299
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 379 EQCKPYESSFSDGCPPVDWCIGCTVCDCDANGHWD 483
+QC P S+ VD GC CDCD G +D
Sbjct: 517 DQCLPEHYGLSEH---VD---GCKACDCDIGGSYD 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,276
Number of Sequences: 27780
Number of extensions: 291166
Number of successful extensions: 973
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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