Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d06
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0112 - 14757947-14758972 31 0.69
04_04_0036 - 22307328-22308026 30 1.2
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 30 1.6
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 29 2.1
03_05_0499 + 24940443-24940994 29 2.1
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 29 3.7
11_01_0556 + 4390000-4390431 28 4.8
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 28 4.8
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640... 28 4.8
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 28 4.8
03_03_0263 + 15984244-15985321,15985411-15986144 28 4.8
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 28 4.8
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 4.8
12_01_0135 + 1042889-1044255,1045368-1045809 28 6.4
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 28 6.4
06_03_1089 - 27521291-27522124 28 6.4
06_01_0486 - 3455030-3455770 28 6.4
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 27 8.5
>09_04_0112 - 14757947-14758972
Length = 341
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 398 LAAHLTD-CSHVDPGAASDRHRRRNVNCAAC-CSRQPTVSKARCRRLSTPSAQPVPPPQM 571
L H D C P A++ ++ CAAC C R RRL S P PPP +
Sbjct: 52 LGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFH------RRLPEGSPPPPPPPAL 105
Query: 572 LPS 580
LP+
Sbjct: 106 LPA 108
>04_04_0036 - 22307328-22308026
Length = 232
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 440 AASDRHRRRNVNCAA-CC--SRQPTVSKARCRRLSTPSAQPVPPPQ 568
AA R+RN C A CC SR S A C + Q +PPPQ
Sbjct: 34 AAGAGARQRNGRCRALCCGASRLSVSSSASCSSVEYAVEQRLPPPQ 79
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 488 CSRQPTVSKARCRRLSTPSAQPVPPPQMLPSLQL 589
CS TV+ R R+ P+PPP +P+L +
Sbjct: 250 CSSSDTVTTPRNRKPELSKLPPIPPPPPMPALSV 283
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 479 AACCSRQPTVSKARCRRLS-TPSAQPVPPPQMLPSLQL 589
+A C +P ++ RR P ++P+PPP LPS L
Sbjct: 550 SAACFLEPLTNRRLTRRCRHRPPSKPLPPPPPLPSKPL 587
>03_05_0499 + 24940443-24940994
Length = 183
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 419 CSHVDPGAASDRHRRRNVNCAAC---CSRQPTVSKARCR--RLSTPSAQPVPPP 565
CSH D R NC C S P + CR R + P P+PPP
Sbjct: 111 CSHFFHAGCVDGWLREKRNCPLCRAVLSSLPPLPNPGCRRGRAAPPCPPPLPPP 164
>10_01_0003 +
46158-46428,46588-46706,46819-46928,48977-49415,
49511-49633,49805-50106,50143-50350,50729-51448
Length = 763
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 101 VPSVANGDCGRNRPFTAKASGDAVACDLRRKETYDDNFKH---HDKRSRSKNKIPKNVRN 271
VP++ N N F +S D + L +E D NFK +RSR + R
Sbjct: 283 VPNLQNAQSAFNSTFQPGSSVDMESLVLYPQEILDKNFKQVILEAERSRKDAFVELLKRK 342
Query: 272 DLESALVGL 298
D ES + G+
Sbjct: 343 DTESRVAGV 351
>11_01_0556 + 4390000-4390431
Length = 143
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 518 RCRRLSTPSAQPVPPPQMLP 577
R R+L TPSA P+PP M P
Sbjct: 46 RLRQLVTPSAPPLPPETMNP 65
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 500 PTVSKARCRRLSTPSAQPVPPPQMLPSL 583
PT + A+ TP QP PPP PSL
Sbjct: 266 PTSASAQRATYGTPLLQPFPPPTPPPSL 293
>09_04_0639 -
19162501-19162878,19162974-19163126,19163366-19164046,
19164747-19164856,19165050-19165125
Length = 465
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 503 LAASNSKRHNSHCAADDDLMQHLDRHVSSQSSEPPD 396
L A ++KR SHC DDD Q R +S + P D
Sbjct: 28 LIAKSAKRKRSHCQQDDDDSQGGKRMRNSVPTLPED 63
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 482 ACCSRQPTVSKARCRRLSTPSAQPVPPPQMLPS 580
+C P + + S P+A P P P+M PS
Sbjct: 363 SCSLSSPPAAPPKMAAASPPAAAPAPAPEMAPS 395
>03_03_0263 + 15984244-15985321,15985411-15986144
Length = 603
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 560 EVLAELMALTACDTALSILLAASNSKRH---NSHCAADDDLMQHLDRHVSSQSSEP 402
E+ + +A+ A + +L S+ H D D+ H+DRH+ QS P
Sbjct: 197 EISSNAIAIIQQGAAFAAMLDLHASESHAAEGEELDVDHDIQHHVDRHLEDQSLPP 252
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +2
Query: 365 GAPPESGDHDGLAAHLTDCSHVD--PGAASDRHRRRNVNCAACCSRQPTVSKARCRRL 532
G P + D AA + H+D G AS R RRR C R T+S RL
Sbjct: 466 GRGPARREED--AATGDEPQHMDCGDGRASPRRRRRRTACCGASRRSATISYTAATRL 521
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -2
Query: 587 AVGTAASVAEVLAELMALTACDTALSILLAASNSKRHNSHCAADDDLMQHLDRHVSSQSS 408
A A+ + E M L D L ++ A+ SK S + D D +Q LD +
Sbjct: 264 AANERATARRIAREYMELVE-DECLELMELAAQSKGLPSMLSLDSDTLQQLDSFRGMLTP 322
Query: 407 EPPDHRGLRFP 375
PP+ L+ P
Sbjct: 323 FPPEPVRLKEP 333
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +2
Query: 365 GAPPESGDHDGLAAHLTDCSHVDPGAASDRHRRRNVNCAACCSRQPTVSKARCRRLSTPS 544
G PP + DG+ + S A H R + C ++ + R R L
Sbjct: 75 GGPPSTAWVDGIIRDIIASSGAAVSVAQLIHNVREI-IRPCNPDLASILELRLRSLLNSD 133
Query: 545 AQPVPPPQMLPSL 583
P PPP P+L
Sbjct: 134 PAPPPPPPSHPAL 146
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 215 KHHDKRSRSKNKIPKNVRNDLESALVGLCDVWF 313
K H +R S++++ + +R VGL +WF
Sbjct: 477 KLHSRRKASRDRLSEQMRKTFRIEAVGLMSLWF 509
>06_03_1089 - 27521291-27522124
Length = 277
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 362 HGAPPESGDHDGLAAHL-----TDCSHVDPGAASDRHRRRNVNCAACCSRQPTVSKARCR 526
HG PE+ A L D G A ++ RR+ ++ S Q + A
Sbjct: 112 HGGRPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKRPPTSSSSS-QAAAAAAAAT 170
Query: 527 RLSTPSAQPVPPP 565
++P+A P PPP
Sbjct: 171 SPASPAASPTPPP 183
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.9 bits (59), Expect = 6.4
Identities = 28/97 (28%), Positives = 35/97 (36%)
Frame = +2
Query: 287 LVGLCDVWFEDIKPHLIRNNIKVHFHGAPPESGDHDGLAAHLTDCSHVDPGAASDRHRRR 466
LV + W +D P ++ H HG PP SG G H H P H +
Sbjct: 16 LVSVAHGWNKDCPPPGSGSSGGGH-HGKPPGSGSGGG--GH-----HGKP--PEHHHHHK 65
Query: 467 NVNCAACCSRQPTVSKARCRRLSTPSAQPVPPPQMLP 577
C S P + R TP P PPP + P
Sbjct: 66 PPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPP 102
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 491 NSKRHNSHCAADDDLMQHLDRHVSSQSSEPPDHRGLRFPVARRGS 357
NS N DDD + L H S+QSS P R R RRG+
Sbjct: 107 NSVLQNEEFDDDDDDSRSLS-HDSAQSSPGPQDRSRRTQEGRRGA 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,556,572
Number of Sequences: 37544
Number of extensions: 345754
Number of successful extensions: 1647
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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