Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d06
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 30 1.1
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 29 2.5
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 29 3.3
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 29 3.3
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 4.3
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 28 4.3
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 27 7.5
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 27 7.5
Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical p... 27 7.5
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 7.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 7.5
AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical ... 27 7.5
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 10.0
AC024805-11|AAK39334.1| 141|Caenorhabditis elegans Hypothetical... 27 10.0
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +2
Query: 224 DKRSRSKNKIPKNVRNDLESALVGLCDVWFEDIKPHLIRNNIKVHFHGAPPESGDHDGLA 403
DKR S + +P N+ D +S V + I H + H HG S H+
Sbjct: 16 DKRDSSSSNLPANIEEDTQSVSSSDSGVSADSIDHH-HHGHGHGHSHGGHGHSHTHNNDD 74
Query: 404 AHLTDCSHVDPGAASDRH 457
+ +DCS GA H
Sbjct: 75 SS-SDCSGAGGGAHKHSH 91
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 464 AADDDLMQHLDRHVSSQSSEPPDHRGLRFPVARRGSEP 351
AA+D + HL HV++ S +P H ++P+ R S P
Sbjct: 644 AAEDRMSSHLKSHVNTASGKP--HITYQYPIRRYFSPP 679
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 431 DPGAASDRHRRRNVNCAACCSRQPTVSK 514
D G S + R+R V C CC+R+ + K
Sbjct: 1829 DVGVYSTKKRQRGVKCPKCCTRRGCLCK 1856
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 431 DPGAASDRHRRRNVNCAACCSRQPTVSK 514
D G S + R+R V C CC+R+ + K
Sbjct: 1829 DVGVYSTKKRQRGVKCPKCCTRRGCLCK 1856
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 434 PGAASDRHRRRNVNCAACC----SRQPTVSKARCRRLSTPSAQPVPPPQMLPSL 583
PG +HR+R+ A QP A +TPSA+P PP + P +
Sbjct: 791 PGTLIRQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQV 844
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 191 KETYDDNFKHHDKRSRSKNKIPKNVRND 274
K T+D + K + RSRS+++ PK R D
Sbjct: 37 KRTHDRDRKRNRSRSRSRSRSPKRSRRD 64
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 434 PGAASDRHRRRNVNCAACC----SRQPTVSKARCRRLSTPSAQPVPPPQMLPSL 583
PG +HR+R+ A QP A +TPSA+P PP + P +
Sbjct: 791 PGTLIRQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQV 844
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 140 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 262
PF + GD CD R ++ D + K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 140 PFTAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKN 262
PF + GD CD R ++ D + K S SKN+I +N
Sbjct: 284 PFEIEDLGDPKNCDSRTNDSADGSGGKLLKSSPSKNRIIRN 324
>Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 320 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 219
+++ K I ++ + P F R W+FY C C+ F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 488 CSRQPTVSKARCRRLSTPSAQPV---PPPQMLPSLQL 589
C Q +S C + P++QPV PP LP +Q+
Sbjct: 321 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQV 357
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 488 CSRQPTVSKARCRRLSTPSAQPV---PPPQMLPSLQL 589
C Q +S C + P++QPV PP LP +Q+
Sbjct: 418 CPAQTDLSNGECISVPAPTSQPVQVMTPPPTLPPVQV 454
>AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 320 YLRTKRHIGQLKHSPNRFERFWEFYSCSCS--FYHD 219
+++ K I ++ + P F R W+FY C C+ F HD
Sbjct: 405 WMKAKDEIEKM-NLPFGFHRRWQFYFCLCAALFAHD 439
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 284 ALVGLCDVWFEDIKPHLIRNNIKVHF 361
+++ +CD+ ++ KP ++R +K HF
Sbjct: 1076 SIISICDMCCQNGKPQVVRRFVKSHF 1101
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 284 ALVGLCDVWFEDIKPHLIRNNIKVHF 361
+++ +CD+ ++ KP ++R +K HF
Sbjct: 1076 SIISICDMCCQNGKPQVVRRFVKSHF 1101
>AC024805-11|AAK39334.1| 141|Caenorhabditis elegans Hypothetical
protein Y51H7C.3 protein.
Length = 141
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 224 DKRSRSKNKIPKNVRNDLESALVGLCDVWFEDIKPHLIRNNIKVHFHGAPPES 382
++ R K K+ K +RN L V V D+ + +N+ H+ G P +S
Sbjct: 41 EETRRQKEKVIKELRNGLPVRHVSTVSVSSTDMSFNTDSSNVTDHYCGLPIDS 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,478,410
Number of Sequences: 27780
Number of extensions: 265729
Number of successful extensions: 957
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -