Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d03
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 28 1.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 1.7
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.2
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 26 5.2
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 6.8
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 6.8
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.0
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 598 IPSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNN 473
IP++PN + T A+ P+NTPT T+ P T S+N
Sbjct: 364 IPASPNVRATQIATQVPNPQNTPT------TTAVPGITNSSN 399
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 601 NIPSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPT 497
N P+APNS T PA+ G+ N PT + PT
Sbjct: 310 NKPTAPNSAFTKPATSTGD--NKPTFSFGNTSKPT 342
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 155 ESVACTAEVTHIPGCMRISSFTEYS-GFC-ITKAADSTTTSTMRT 283
E++ T VT +PG SS+T YS G +T+++D ++ + T
Sbjct: 40 ETILETVYVTAVPGANSSSSYTSYSTGLASVTESSDDGASTALPT 84
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 598 IPSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
+PS+P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1685 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1699 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ P +PT TSP+ T + +P
Sbjct: 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 471 PQRYYITSYNQITEMCVVVTGKCQSKWNNTGY*VNRAQSLVTAVQVGHQTRQS 313
P +Y T+Y+ T V GKC ++++N G+ V + + + RQS
Sbjct: 309 PTQYLGTNYSNGT----AVDGKCVTQFDNVGFLVGTSSTRYNEALIDVSLRQS 357
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 310 LALPCLMADLYRGNQALSAIHLVSGIVPFALALAGD 417
LAL C++ RG++A+ + +GIVP + L D
Sbjct: 86 LALQCVVNVGIRGSEAIRIRVVEAGIVPIVVTLLDD 121
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 434 VIWL*LVI*YLWGIIRFSITGSGAG 508
++W L+I +L+G+ RFS+ + AG
Sbjct: 238 LLWPFLIILHLYGVERFSLPSTTAG 262
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 619 ETVYMHNIPSAPNSKDTSPASPRGEPRNTP 530
ET HN S P+S ++P S G +TP
Sbjct: 421 ETKQSHNQLSIPSSTPSTPLSDNGPTYSTP 450
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 21 FFSNVIITLIYIVYFFNYLTWYGSR 95
F S ++ IY++YFF +L SR
Sbjct: 493 FISLSLVATIYVIYFFGHLIRKHSR 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,234
Number of Sequences: 5004
Number of extensions: 67142
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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