Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d03
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 0.33
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 30 1.3
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404... 29 2.3
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 2.3
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 29 3.0
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 3.0
07_03_0091 + 13312904-13313647 29 3.0
02_05_0158 - 26362259-26362695,26363732-26363903 29 4.0
08_02_1087 + 24245535-24246350 28 5.3
07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670 28 5.3
09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116 28 7.0
07_03_0089 - 13300902-13301645 28 7.0
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 28 7.0
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 7.0
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 28 7.0
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 27 9.3
09_04_0508 + 18203079-18203900 27 9.3
02_01_0114 - 857835-859464,860403-860444,860530-860537 27 9.3
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -3
Query: 601 NIPSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTPKILYYKL*PDYRDV 425
++P +P+S DTSP +P G +TP P P+P S TP YY P DV
Sbjct: 336 DVPPSPSS-DTSPTTPGGGSPSTPCDTP-----PSPSSGTSPTTPGGGYYPPTPSVGDV 388
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Frame = -3
Query: 586 PNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYT-------ESNNTPKILYYKL*PDYRD 428
P DT P+ G R TP C++PTPC T S TP YY P D
Sbjct: 281 PTPSDTPPSPSSGSSRTTPGG----CSTPTPCGTPPAPSSGTSPTTPGGSYYPPTPSIGD 336
Query: 427 V 425
V
Sbjct: 337 V 337
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P +P+S DTSP +P G TPT T P+P S TP
Sbjct: 235 PPSPSS-DTSPTTPGGGGGYTPTPSD---TPPSPSSGSSPTTP 273
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -3
Query: 604 HNIPSAPNSKDTSPASPRGE----PRNTPTIQPQLCTS-PTP 494
H+ P PNS +P +PRG+ PR TP PQ + PTP
Sbjct: 554 HSAPLVPNS---APLAPRGQDHFRPRQTPPSAPQTASPLPTP 592
>11_04_0467 +
18039458-18039638,18040136-18040227,18040336-18040452,
18041228-18041313,18041385-18041643,18041761-18041957,
18042181-18042213,18043371-18043862,18044236-18044299,
18045478-18045618,18045726-18045803,18047077-18047166,
18047260-18047352,18047430-18047489,18047567-18047635,
18047737-18047823,18048337-18048379,18048517-18048587,
18049050-18049143,18050335-18050447,18050909-18050998,
18051075-18051155,18052211-18052291,18052369-18052464,
18052543-18052599,18052693-18052737,18052807-18052872,
18052961-18052999
Length = 1004
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 573 IHHPQARGGSHEIRQQSSPSCVPAPLPVILNRIIPQRYYITSYNQITEMCVVVTGKCQSK 394
+ H Q + R+++ C A L I++ I R +I E +VV +C++K
Sbjct: 694 LDHLQPYAKLYIYRKKTESGCCTALL--IMDSITNYRNLNNIQKEIFEYLIVVNAECETK 751
Query: 393 WN 388
WN
Sbjct: 752 WN 753
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 592 SAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNT 470
S ++D SPASP P P + LC SP YTES+ T
Sbjct: 145 SYETAEDDSPASP--PPTPPPLV---LCASPDSSYTESSPT 180
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 EDNLNASIAHVVLCCVAGRGISRMHGRSYTHPGMH-ANFFVHGILGFLHYQSGRFNNDFN 273
EDNL +AHVVL G G ++ P H F H G + RF
Sbjct: 19 EDNLKEMVAHVVLPAKEIIGWRPAFGEAFPTPDTHEIVVFAHFFYGRFSLPTSRFFRGIL 78
Query: 274 DAYTIS 291
+ Y IS
Sbjct: 79 NFYGIS 84
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTPKILYYKL*PDY 434
P + S + SP SP P + QP SPT YT S P Y P+Y
Sbjct: 1768 PYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGG-PSPDYSPTSPNY 1820
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTP 467
P++P+ TSP+ G P +PT TSP+ T + +P
Sbjct: 1573 PASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSP 1615
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/87 (27%), Positives = 34/87 (39%)
Frame = -3
Query: 595 PSAPNSKDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTPKILYYKL*PDYRDVRCR 416
P++P+ TSP+ P +PT TSP+ T N +P Y P
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYN--PSSAKYSPS 1756
Query: 415 HRQVPKQMEQYRILGESRSKPGYRGTS 335
H P R+ S++ P Y TS
Sbjct: 1757 HAYSPSSP---RLSPYSQTSPNYSPTS 1780
>07_03_0091 + 13312904-13313647
Length = 247
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = -3
Query: 601 NIPSAPNSK------DTSPASPRGEPRNTPTIQPQLCTSPTP 494
N+P N + D PA P+ +P TP QP+ SP P
Sbjct: 21 NVPDIANGRVIEAKSDPKPADPKPKPDPTPKPQPETKPSPQP 62
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 592 SAPNSKDTSPASPRGEP-RNTPTIQPQLCTSPTPCYTESNNT 470
S+P S T PA+P +P +TP+ P T+PT T+S +
Sbjct: 136 SSPPSTAT-PATPSSDPGMDTPSSTPDATTTPTTTTTKSTGS 176
>08_02_1087 + 24245535-24246350
Length = 271
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 365 ALKAWLPRYKSAIKHGKAKYLDAL*LIVYASLKSL 261
A++A++P YK+ GKA L + VY SL+SL
Sbjct: 90 AMRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSL 124
>07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670
Length = 438
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 575 GYITRKPEGGATKYANNPAPAVYQPHSL 492
GY + GG Y PAPA QPH +
Sbjct: 320 GYCLQLDAGGNLYYGRLPAPAPVQPHGI 347
>09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116
Length = 372
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 467 WGIIRFSITGSGAGTQLGLDCWRISWLPPRACG 565
W S + SGA G DC+ + W PP A G
Sbjct: 33 WDATTSSGSSSGASGGGGGDCFLLGWEPPFAAG 65
>07_03_0089 - 13300902-13301645
Length = 247
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 574 DTSPASPRGEPRNTPTIQPQLCTSPTP 494
D PA P +P TP QP+ SP P
Sbjct: 36 DPKPADPNPKPDPTPKPQPETKPSPQP 62
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 437 LPRCALSSPASAKANGTI 384
LPRC ++SP + NGTI
Sbjct: 220 LPRCLMNSPCDTEQNGTI 237
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 592 SAPNSKDTSPASPRGEPRNTPTIQPQLCTSP 500
SAP K SP+SP P P P +P
Sbjct: 129 SAPEQKPASPSSPDAPPPPPPPASPDAAKTP 159
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 510 VPAPLPVILNRIIPQRYYITSY 445
V P+++N +I RYY+T Y
Sbjct: 407 VSKDFPIVINSVIAGRYYVTEY 428
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 433 RDVRCRHRQVPKQMEQYRILGESRSKPGYRGTSRPSNTAKLNTLMLYNL 287
+D+R R + + +++R + P RGTS P K TL ++ L
Sbjct: 19 QDLRLRQARRRRHHQRHRRRRGGQPAPNRRGTSSPKTLEKRRTLPVWQL 67
>09_04_0508 + 18203079-18203900
Length = 273
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 365 ALKAWLPRYKSAIKHGKAKYLDAL*LIVYASLKSL 261
A++A+LPRYK+ GKA+ L + VY S SL
Sbjct: 90 AVRAFLPRYKNLTADGKAELLLFHAVPVYYSRGSL 124
>02_01_0114 - 857835-859464,860403-860444,860530-860537
Length = 559
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 106 LNASIAHVVLC-CVAGRGISRMHGRSYTHPGMHAN 207
+N S+ H +L C R + R+H ++ TH G+H N
Sbjct: 32 MNRSVCHHLLTQCKTIRELQRIHAQALTH-GLHPN 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,094,544
Number of Sequences: 37544
Number of extensions: 466363
Number of successful extensions: 1666
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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