Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d03
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.9  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 176 LPCMRLIPRPATQHNTT*AIDAFKLSSSRPIP 81
           +P M L+PRP + H T    D+F  + ++ +P
Sbjct: 648 MPSMPLLPRPISCHTTP---DSFIEAPNKTLP 676


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 492 QGVGLVHSWGWI 527
           QGVG+V++ GW+
Sbjct: 749 QGVGVVNAGGWL 760


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 519 PSCVPAPLPVILNRIIPQRYYITSYNQITEM 427
           P CVP P+P    R     Y   S ++I +M
Sbjct: 41  PGCVPKPIPSYACRGRCSSYLQVSGSKIWQM 71


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 364 RSKPGYRGTSRPSNT 320
           R+ P + GTS P+N+
Sbjct: 923 RASPAFSGTSSPTNS 937


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 AETRVFRERRNSHASRDV 185
           AE R   ERR    SRD+
Sbjct: 40  AENRYLTERRRQQLSRDL 57


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 AETRVFRERRNSHASRDV 185
           AE R   ERR    SRD+
Sbjct: 40  AENRYLTERRRQQLSRDL 57


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 SGRFNNDFNDAYTISYK 297
           +  +NN++N+ Y  +YK
Sbjct: 98  NNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 SGRFNNDFNDAYTISYK 297
           +  +NN++N+ Y  +YK
Sbjct: 98  NNNYNNNYNNNYNNNYK 114


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 577 KDTSPASPRGEPRNTPTIQPQLCTSPTPCYTESNNTPKILYYKL 446
           ++TS    R       + +P++ +S +     +NN  K LYY +
Sbjct: 293 RETSKERSRDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNI 336


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 185 HIPGCMRISSFTEYSGFCITKAADSTTTSTMRTQ*VIKH 301
           HI G + ++  T Y    I K  D    + ++    +KH
Sbjct: 413 HIKGVISLNKLTSYVISGIVKCTDFVDKAMVKQYVKVKH 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,179
Number of Sequences: 438
Number of extensions: 5298
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)