Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20d02
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    27   0.16 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    27   0.16 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.2  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 260 PLY*DQFHKRAGFRQVGSRAPSSIAASTRRPSGPRLGPRVRICTPSA 120
           P Y  QFH +  F+   + AP++ ++S+   S P+        +P+A
Sbjct: 12  PKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 260 PLY*DQFHKRAGFRQVGSRAPSSIAASTRRPSGPRLGPRVRICTPSA 120
           P Y  QFH +  F+   + AP++ ++S+   S P+        +P+A
Sbjct: 12  PKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 166 LDPGLAHVYGYALPLH 119
           L PGL H Y + + LH
Sbjct: 286 LRPGLTHKYTHEIKLH 301


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 449 NSALSRSYSPRLLYQLSTVQGDTVGGIHRNEL 354
           +S   +  +PR   +L  V GD   G H N L
Sbjct: 172 DSKKKKGPTPRQQEELCLVCGDRASGYHYNAL 203


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 203 HGIRPDGTLPACE 241
           HGI+P  TLP+ E
Sbjct: 169 HGIQPSPTLPSKE 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,868
Number of Sequences: 336
Number of extensions: 2805
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)