Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20d01
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 69 4e-12
11_06_0423 + 23349588-23350084,23350133-23350346 38 0.005
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 33 0.15
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 1.1
10_01_0252 + 2646074-2646430,2646476-2648158 30 1.4
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 30 1.4
09_02_0342 + 7464679-7464691,7466689-7468136 29 4.4
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 5.8
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 28 5.8
07_01_0655 - 4910497-4911972,4912035-4912415 28 7.7
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729... 28 7.7
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 28 7.7
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875... 28 7.7
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +1
Query: 406 RELEL-ELFKHLHDLPLRWHLSRKTGEVLRVMDRGTDSINNLLSYILFSITPTLVDILVA 582
R EL ++F HLH+L LR+HLSR+TG + R++DRG+ +IN +L+ ++F++ PT+++I +
Sbjct: 375 RPAELAKVFSHLHELDLRYHLSRQTGALNRIIDRGSRAINYILTVMVFNVVPTILEIGMV 434
Query: 583 VIYFVTAFNIWFGLIVFTTMILYIIATI 666
F F I ++ YI T+
Sbjct: 435 SSILAYKFGSTFAWITSVSVATYIAFTL 462
>11_06_0423 + 23349588-23350084,23350133-23350346
Length = 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = -2
Query: 663 CCDNIQDHCSKNDQSEPNIERRDKIDDCHQDIDQRWSDREQNVREEIVYRIR 508
C D + C +D ++ I+ D DDC +D+D++ +++++ + ++YR+R
Sbjct: 187 CVDANECKCGGDDWADEFIDEED--DDCSEDVDEKEEEKDESCCQRMIYRLR 236
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 462 FVSQNRRSPQGDGPRNGFYKQSPLVHSVLYHSNA-GRYLGGSHLFCHGVQYLVRTDRFYY 638
F +QN S +G GP+ Y Q+ + YH N G + G +G +Y +R++
Sbjct: 455 FRNQNEYSGRGRGPQGNGYHQNG--NGGGYHQNGNGYHQNGDGYHQNGNRYNQNGNRYHQ 512
Query: 639 NDPVYYRN 662
N YY+N
Sbjct: 513 NGDEYYQN 520
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 302 YMCFSSSSKEGVPAEWVY*IICVRFCGSRSNNTPQESWSWNC 427
Y+CF S + + P W+ C CG R N NC
Sbjct: 172 YLCFCSKTVDPAPDPWILPHSCGDVCGRRLNADRDSGCEHNC 213
>10_01_0252 + 2646074-2646430,2646476-2648158
Length = 679
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 10 MSCPFQNHLSV-KTE--DQDIKFKLKDDNRSTFRNVFTKLRTLLP 135
+S P+ LS+ KT D+ L+++ TF ++TKLRTL+P
Sbjct: 236 LSLPYSLRLSILKTLWIRDDVHLLLQEELAHTFHRLYTKLRTLVP 280
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 163 LQLYVLICILALIAGRAINL-YVPIYNRLIFNSISE 267
LQ VL C+L L +GR + + PIYN + +++E
Sbjct: 7 LQAAVLCCLLVLCSGRELKTKHTPIYNSTLARTLAE 42
>09_02_0342 + 7464679-7464691,7466689-7468136
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -2
Query: 435 MLEQFQLQLSCGVLLDLDPQKRTHIIQ*THSAGTPSLEELEKHIYQYQIPAEGERR 268
++EQ + + G+L+ +D Q + +++ A T ++H Y Q+P + RR
Sbjct: 63 LMEQEKKVMLYGILILVDEQHKAAVLRRLVDAVTALESVAKEHYYMEQVPCDAMRR 118
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 338 VPPPWRNLKNTYINTRSQRKERGGSDMLLNISL 240
VPP RN+++TY + E SD +LNI L
Sbjct: 960 VPPSSRNVESTYASPLYDPMEDSTSDGILNIGL 992
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 654 NIQDHCSKNDQSEPNIERRDKIDDCHQDIDQR 559
N DH K ++P + R+ K+D QD+ R
Sbjct: 639 NHSDHLHKTSFNQPLLNRKAKLDSSRQDLPMR 670
>07_01_0655 - 4910497-4911972,4912035-4912415
Length = 618
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +1
Query: 499 DRGTDSINNLLSYILFSITPTLVDILVAVIYFVTAFNIWFGLIVFTTMIL 648
+ G IN+ ++ F++T + A++Y ++ + W GL + ++L
Sbjct: 193 ESGRRGINSFFNWYYFTLTIAVCASSTAIVYVQSSVSWWVGLAIPAALML 242
>06_03_1229 +
28571131-28571235,28572108-28572656,28572749-28572918,
28573454-28573669,28573787-28573946
Length = 399
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 183 MYTGSHCWKSYQSIRPYIQQADI*QHIGTASLLPLGSGIDICVFQVPPRRGYRR 344
+Y+ + C K Y+S + + Q + H+ AS P S I + + P R RR
Sbjct: 66 LYSCALCGKEYRSSKAHAQHLNSRSHLMKASQEPNASIAGITIVKPRPERVQRR 119
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 584 TATKISTSVGVIENRMYERRLFIESVPR 501
T I+T GV R Y RR+F+E VP+
Sbjct: 229 THIMIATGTGVAPFRGYLRRMFMEDVPK 256
>03_04_0133 +
17585278-17585282,17586257-17586386,17587444-17587591,
17587661-17587849,17587999-17589150,17589303-17589466
Length = 595
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 585 DCHQDIDQRWSDREQNVREEIVY 517
D +DI QRW+D E+++ +VY
Sbjct: 354 DMGEDIAQRWTDEEESLFYRVVY 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,710
Number of Sequences: 37544
Number of extensions: 445053
Number of successful extensions: 1566
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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