Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c22
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 169 4e-43
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.9
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 26 5.2
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 26 5.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 6.8
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 6.8
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 25 6.8
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 6.8
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 9.0
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 9.0
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 169 bits (410), Expect = 4e-43
Identities = 85/184 (46%), Positives = 121/184 (65%), Gaps = 4/184 (2%)
Frame = +1
Query: 88 MVKKKIDNRIRVMIENGVKLGHRTMFLLIGDKSRDQVPILYDMLVKSTVKARPTVLWCYK 267
M KK +D+RI +I+NG + R+ F+++GD++RDQV L+ +L +S V ARP VLW YK
Sbjct: 1 MPKKALDSRIPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYK 60
Query: 268 NKDEAISNHXXXXXXXXXXXXL----EVSEESLFDAFRVATTIHGRYYSESHAMLGQTYG 435
++H + + E F+ F T I YY ES +LGQTYG
Sbjct: 61 KDLLGFTSHRKKRENKIKKEIKRGIRDPNSEDPFELFCSITNIRYCYYKESEKILGQTYG 120
Query: 436 VCVLQDFEALTPNLMARTIETVEGGGLIIFLLKTMDSLRQLHSITMDVHSRFKTEAYDTV 615
+ VLQDFEALTPNL+ARTIETVEGGG+++ LL ++SL+QL++++MD+HSR++TEA+ V
Sbjct: 121 MLVLQDFEALTPNLLARTIETVEGGGIVVLLLHKLNSLKQLYTMSMDIHSRYRTEAHSDV 180
Query: 616 VNRF 627
RF
Sbjct: 181 TARF 184
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 345 FGDFQFSSCYFLGSFTTMIANCFIFVLI 262
FG F+ C+F + T+I IF+L+
Sbjct: 393 FGVFRIPRCFFNSTIATLITIIVIFILL 420
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 359 MHSEWPLLFTVDIIQKVMQCSVRHMEFAFCKILKL 463
+ S PL D+ QK+MQ RH+ F + L L
Sbjct: 5 LKSTSPLAVKYDLSQKIMQHLDRHLIFPLLEFLSL 39
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 501 YSFNCSCHQIGGESFKILQNANSICLTEH 415
Y + C + +GGE F+ LQ CL+E+
Sbjct: 267 YLYLCMEYCMGGEFFRALQRRPGRCLSEN 295
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 179 SPMRRNMVRWPSLTPFSIITLIRLSIFFFTI 87
SP R+++ W + T + ++ I+FFTI
Sbjct: 559 SPTPRDLLEWTAPTKYVYSQVLNKLIYFFTI 589
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 323 LENWKSPKNHCLMHSEWPLLFTVDIIQKVMQCSVRHMEFA 442
++NWK+ N + S++ L VD ++Q S E+A
Sbjct: 249 IDNWKNYPNALIQISDFELSIFVDSKNHLVQSSCGSQEYA 288
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 149 PSLTPFSIITLIRLSIFFFTIFGYVQS 69
P L PF I ++ FT+ Y+ S
Sbjct: 2 PQLVPFYFINILSFGFLIFTVLLYISS 28
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 532 KTMDSLRQLHSITMDVHSRFKTEAYDT 612
KTMDSLR L S V KT+A D+
Sbjct: 110 KTMDSLRTLASPMAHVTRSSKTDAIDS 136
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 127 IENGVKLGHRTMFLLIGDKSRDQV----PILYDMLVKSTVKARPT 249
++NGV MF IG+++RD V P+L D L+ R T
Sbjct: 1027 VQNGVLKSLAFMFEYIGEQARDYVYAITPLLADALMDRDAVHRQT 1071
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 623 RLTTVS*ASVLNLECTSIVIECSCLRESMVLSKNIIRPPPSTVSIVRAIKLGVR 462
R T S L+L C + +E + + +L NI+ P ++ VR G+R
Sbjct: 1069 RQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIR 1122
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 396 LFRKSCNARSDIWSLRFARF*SSHPQFDGT 485
L ++ A+ +WS RF+RF H F T
Sbjct: 447 LIKQQEEAKKSLWSKRFSRFYYGHYVFVNT 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,158
Number of Sequences: 5004
Number of extensions: 53601
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -