Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c22
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358...   180   8e-46
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   7.0  
10_03_0023 - 7151465-7152111,7152222-7152405                           27   9.3  
08_02_0541 + 18369702-18369800,18370934-18371055,18371370-183714...    27   9.3  
03_02_0287 + 7104144-7106069                                           27   9.3  

>12_01_0456 +
           3587244-3587440,3587595-3587766,3587877-3587999,
           3588165-3588338,3588537-3588647,3588737-3588870,
           3588945-3589038,3589122-3589220,3590494-3590630,
           3590709-3590803,3590922-3591045,3591122-3591209,
           3592867-3593043,3593130-3593167,3593398-3593485,
           3594101-3594209,3594374-3594443,3594520-3594667,
           3595069-3595197,3595292-3595417,3595596-3595658,
           3595952-3596197
          Length = 913

 Score =  180 bits (438), Expect = 8e-46
 Identities = 90/183 (49%), Positives = 124/183 (67%), Gaps = 4/183 (2%)
 Frame = +1

Query: 91  VKKKIDNRIRVMIENGVKLGHRTMFLLIGDKSRDQVPILYDMLVKSTVKARPTVLWCYKN 270
           ++KK+D RIR +IENGV+   R+MF+++GDKSRDQ+  L  ML KS VK+RP+VLWCY++
Sbjct: 1   MRKKVDERIRTLIENGVRERQRSMFVIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRD 60

Query: 271 KDEAISNHXXXXXXXXXXXX----LEVSEESLFDAFRVATTIHGRYYSESHAMLGQTYGV 438
           K E IS+H                ++  +   F  F   + I    Y +S  +LG T+G+
Sbjct: 61  KLE-ISSHKKKRAKQIKKLMQRGLMDPEKADPFSLFLETSDITYCLYKDSERVLGNTFGM 119

Query: 439 CVLQDFEALTPNLMARTIETVEGGGLIIFLLKTMDSLRQLHSITMDVHSRFKTEAYDTVV 618
           C+LQDFEALTPNL+ARTIETVEGGGLII LL+++ SL  L+++ MDVH RF+TE++    
Sbjct: 120 CILQDFEALTPNLLARTIETVEGGGLIILLLRSLSSLTSLYTMVMDVHERFRTESHTQAA 179

Query: 619 NRF 627
            RF
Sbjct: 180 ARF 182


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 374  PLLFTVDIIQKVMQCSVRHMEFAFCKILKLSPPI 475
            PL  +VD+  + M     H  F+FC+ ++L  P+
Sbjct: 1639 PLHLSVDLQAEYMDVGFSHQIFSFCRSMELKFPV 1672


>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 575 SIVIEC-SCLRESMVLSKNIIRPPPSTVSIVRAIKLGVRASKSCKTQTP 432
           ++VI C  C   +    KN+ +PP S V +V ++  G  A+K+  +  P
Sbjct: 16  AVVISCFHCHLAAHHGGKNVRQPPSSVVVVVGSVHSGSDATKAAVSGAP 64


>08_02_0541 +
           18369702-18369800,18370934-18371055,18371370-18371439,
           18371530-18371679,18371776-18371911,18372000-18372096,
           18372193-18372262
          Length = 247

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 269 FL*HQSTVGLAFTVDLTNISYKMGT*SLLL---SPMRRNMVRWP 147
           FL  Q  +GL   + L N+S  +G  SLLL    P+ +    WP
Sbjct: 55  FLGFQLLLGLPILLQLNNLSQILGVFSLLLVFSYPLMKRFTYWP 98


>03_02_0287 + 7104144-7106069
          Length = 641

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 VKLGHRTMFLLIGDKSRDQVPILYDMLVKSTVK 237
           +++G R    L+GDKS  +   +Y +L K  VK
Sbjct: 512 IEVGRRVHVFLVGDKSHPKADEIYALLKKLYVK 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,369
Number of Sequences: 37544
Number of extensions: 308593
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)