Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c19
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    43   4e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    41   2e-04
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    37   0.003
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    34   0.018
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    28   1.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.3  

>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
 Frame = +1

Query: 1   IDLVINNA--GIANESDP---KAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGGTIVNI 165
           +D+VINNA  G+  E +    + + +++ VN+  +   T ++L LMR  + G GG I+ I
Sbjct: 76  VDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMR--ESGKGGRILQI 133

Query: 166 SSIGCMCQHAPALFVYMGTKSAVLQFSNCIGRE 264
           SS+      +P L +Y  +K AV   S  I RE
Sbjct: 134 SSVAGY-YPSPCLSMYNASKFAVEGLSQTIMRE 165


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
 Frame = +1

Query: 1   IDLVINNAGIANESDPKAIRKEVEVNYIALVNGTLKSLELMRKDK----GGNGGTIVNIS 168
           ID++INNAG+A  +D K I   ++     +    L  + + R         N G I+N+ 
Sbjct: 86  IDVLINNAGLALGTD-KVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVG 144

Query: 169 SIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKT 324
           SI     +     VY  TKSA+ QF++ + +E     T +RI+ V  G+ +T
Sbjct: 145 SIAGRESYVGGS-VYCSTKSALAQFTSALRKETI--DTRIRIMEVDPGLVET 193


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
 Frame = +1

Query: 1   IDLVINNAGIANESDPKAIRKEVEVNYIALV---NGTLKSLELMRKDKGGNGGTIVNISS 171
           ID++INNAG+A+++  + +  E   + ++LV   N   +   +    K G GG+IVNI S
Sbjct: 74  IDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGS 133

Query: 172 I-GCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVC 306
           + G +   +PA   Y   K+ +   +  +     Y   G+R+  VC
Sbjct: 134 VNGHIYLGSPA---YSAAKAGLENLTKALAVR--YGPLGIRV-NVC 173


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +1

Query: 1   IDLVINNAGIAN------ESDPKAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGGTIVN 162
           +D VI NAG+        ++D    RK  ++N+ ++V     ++  +RK K    GTIV 
Sbjct: 79  LDSVILNAGVLEPIAKIADADINEWRKLFDINFFSVVETVKYAIPHLRKTK----GTIVI 134

Query: 163 ISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREE 267
           +SS G   +  PA   Y  +K+A+      +G EE
Sbjct: 135 VSS-GAAVRVFPAWAAYCCSKAAINMLVMNLGSEE 168


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 236 CNLVIALGGKNIIVKQECAF*LCALESQKLAFTTTSKVLMKTLTKICNRL 385
           C + I LGG N IVK  C   L  ++  +   ++T     K +T+ C++L
Sbjct: 233 CLITIDLGG-NSIVKMNCNSHLRGIKRTRKLGSSTYDSKQKPITEFCSKL 281


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 495  RWAIFSYEPGATAFTFLDCFY-RTFGC 418
            RW  F Y P +TA    DCF    FGC
Sbjct: 1933 RW--FQYAPSSTACQMFDCFMCWFFGC 1957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,181
Number of Sequences: 5004
Number of extensions: 52508
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)