Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte20c19
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 43 3e-04
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042 42 7e-04
11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877 41 0.001
06_02_0059 - 11022306-11022578,11022812-11022881,11022966-110232... 36 0.033
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452... 36 0.043
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 31 0.93
04_03_0648 - 18393142-18393174,18393259-18393341,18393569-183936... 31 0.93
05_01_0292 - 2285238-2286023,2286094-2286210 31 1.2
02_03_0341 - 17948124-17948183,17948417-17948499,17948668-179487... 30 1.6
07_03_0237 - 15606012-15606312,15606593-15606606,15606979-156074... 29 4.9
04_03_0590 + 17621148-17621370,17622145-17622671 28 6.5
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 42.7 bits (96), Expect = 3e-04
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Frame = +1
Query: 1 IDLVINNAGIA-------NESDPKAI-RKEVEVNYIALVNGTLKSLELMRKDKGGNGGTI 156
+D+ IN AGIA + SD + R V VN +A+++GT + ++MR G G I
Sbjct: 93 LDICINCAGIAIKTLVYDDRSDGTSTWRHAVNVNLVAVIDGTRIASQIMR--SGKKPGVI 150
Query: 157 VNISSIGCMCQHAPALF--VYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKTGI 330
+NI S + P F +Y GTK+ V+ F+ + + G+R+ +C +T +
Sbjct: 151 INIGSAAGL---YPMNFDPIYSGTKAGVVMFTRSLAP---LKRHGIRVNVLCPEFVQTNM 204
Query: 331 YNNL 342
L
Sbjct: 205 AEQL 208
>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
Length = 268
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +1
Query: 133 KGGNGGTIVNISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFG 312
+GG GG +VNISS+ PAL VY TK + Q + + E ++ G+R+ V G
Sbjct: 148 RGGGGGCVVNISSVAGSV-GMPALAVYSMTKGGMNQLTRSLAAE--WAGDGIRVNCVAPG 204
Query: 313 ITKTGIYNNLKSFDENINKDMQQI 384
KT I + E I +M ++
Sbjct: 205 GVKTDICQDETIDPELIKSEMDRL 228
>11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877
Length = 264
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +1
Query: 136 GGNGGTIVNISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGI 315
GG GG +VNISS+ PAL VY TK + Q + + E ++ G+R+ V G
Sbjct: 145 GGGGGCVVNISSVAGTV-GIPALAVYSMTKGGMNQLTRSLAAE--WAGDGIRVNCVAPGG 201
Query: 316 TKTGIYNNLKSFDENINKDMQQI 384
KT I + E I +M ++
Sbjct: 202 VKTDICQDETIDPELIKSEMDRL 224
>06_02_0059 -
11022306-11022578,11022812-11022881,11022966-11023254,
11023770-11024109
Length = 323
Score = 35.9 bits (79), Expect = 0.033
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +1
Query: 1 IDLVINNAGIA-------NESDPKAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGGTIV 159
+ +V+NNAG+A +E + + + + + VN +AL T L M +G G +V
Sbjct: 130 VGVVVNNAGVAKPGAMFLHEVEVEPLMRMIRVNMLALTKVTAAVLPGMVM-RGR--GAVV 186
Query: 160 NISSIGCMCQHA-PALFVYMGTKSAVLQFSNCIGREEYYSKTGVRI 294
NI S + P VY GTK+ V +FS + E Y + G+ +
Sbjct: 187 NIGSASAEALPSFPLYSVYAGTKAYVGEFSRGLSVE--YKRKGIDV 230
>04_03_0745 +
19244089-19244521,19244638-19244723,19245090-19245221,
19245335-19245499,19245602-19245892
Length = 368
Score = 35.5 bits (78), Expect = 0.043
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Frame = +1
Query: 1 IDLVINNAGIAN----ESDPKA--IRKEVEVNYIALVNGTLKSLELMRKDKGGNGGTIVN 162
+D ++NNAG+AN E P ++ ++VN+ V+ T +L + K G VN
Sbjct: 145 LDHLVNNAGLANVCWFEEVPDVANFKQVLDVNFWGTVHPTHAALPHL---KASRGKIFVN 201
Query: 163 ISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILT 300
S+ + P + Y +K+AV F+ + R E + + GV + T
Sbjct: 202 SSASAVLAM--PRMSFYNASKAAVHNFAETL-RMELHGEVGVTVAT 244
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 22 AGIANESDPKAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGG 150
AG++ DP +K E N +LK + RK+ GG GG
Sbjct: 147 AGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMPEARKEPGGGGG 189
>04_03_0648 -
18393142-18393174,18393259-18393341,18393569-18393662,
18393746-18393880,18394190-18394222,18394302-18394396,
18394494-18394539,18394639-18394719,18395464-18395517,
18395809-18395951,18397645-18397804
Length = 318
Score = 31.1 bits (67), Expect = 0.93
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Frame = +1
Query: 1 IDLVINNAGIANESDPKAIRKE-----VEVNYIALVNGTLKSLELMRKDKGGNGGTIVNI 165
ID+++NNAGI ++ ++K +++N + T + ++M K K G I+NI
Sbjct: 154 IDVLVNNAGITRDTLLMRMKKSQWQDVIDLNLTGVFLCTQAATKIMMKKKKGK---IINI 210
Query: 166 SS-IGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFG 312
+S +G + A Y K+ V+ + + RE Y+ + + + G
Sbjct: 211 ASVVGLVGNIGQA--NYSAAKAGVIGLTKTVARE--YASRNINVNAIAPG 256
>05_01_0292 - 2285238-2286023,2286094-2286210
Length = 300
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Frame = +1
Query: 1 IDLVINNAGIA---------NESDPKAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGGT 153
ID+++NNA E D + + + +Y + +K + R G G +
Sbjct: 127 IDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCS 186
Query: 154 IVNISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFG 312
I+N SSI + L Y TK A++ F+ + + ++ G+R+ V G
Sbjct: 187 IINTSSINAY-KGNKTLLDYTATKGAIVAFTRALALQ--LAEEGIRVNGVAPG 236
>02_03_0341 -
17948124-17948183,17948417-17948499,17948668-17948761,
17948848-17948982,17949099-17949131,17949207-17949301,
17949394-17949439,17949517-17949597,17949874-17949927,
17950361-17950506,17952192-17952330
Length = 321
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +1
Query: 1 IDLVINNAGIANESDPKAIRKE-----VEVNYIALVNGTLKSLELMRKDKGGNGGTIVNI 165
ID+++NNAGI ++ ++K V++N + T + ++M K K G ++NI
Sbjct: 148 IDVLVNNAGITRDTLLLRMKKSQWQDVVDLNLTGVFLCTQAATKVMMKKKKGR---VINI 204
Query: 166 SSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKTGIYNNL 342
+S+ + + + Y K+AV+ + RE ++ + + V G + + + L
Sbjct: 205 ASVVGLTGNLGQV-NYAAAKAAVIGLTKTTARE--FASRNITVNAVAPGFISSDMTSQL 260
>07_03_0237 -
15606012-15606312,15606593-15606606,15606979-15607469,
15608444-15608483
Length = 281
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = -2
Query: 270 IFFPPNAITKLQHSTLCPHVNKQSWCMLTHTTNR*NIHNRSSVTAFVLAHKF*GFQCSIY 91
+ F P ++ ++ T+C + +Q + + N +I+NRS++T +V F ++ ++
Sbjct: 166 LVFDPGLSSQFENITVCEAIEEQKFEWDSDNDNVIDINNRSNLTGYVTILGFHPYKEVVF 225
Query: 90 KSNVI 76
S+ +
Sbjct: 226 LSHTL 230
>04_03_0590 + 17621148-17621370,17622145-17622671
Length = 249
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 IANESDPKAIRKEVEVNYIA-LVNGTLKSLELMRKDKGG 141
+ E +PK + K+ +VN++A +V T+K E+ D G
Sbjct: 114 VVKEDEPKELLKDSKVNFMANVVEDTMKEKEINEDDHMG 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,724
Number of Sequences: 37544
Number of extensions: 298605
Number of successful extensions: 646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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