Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c19
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   1e-04
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
 Frame = +1

Query: 1   IDLVINNAGI----ANESDPKAIRKEV-EVNYIALVNGTLKSLELMRKDKGGNGGTIVNI 165
           ID++INNA I      ++D     K++ ++N + L     + L+LM+K KG N G IVNI
Sbjct: 85  IDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKK-KGINNGIIVNI 143

Query: 166 S-----SIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKT 324
           +     ++  M ++ PA   Y+ +K A+   ++C+  E    ++ ++++++   + +T
Sbjct: 144 NDASGLNLLPMNRNRPA---YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVET 198


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 67  VEVNYIALVNGTLKSLELMRKDKGGNGGTIVNISSIGCMCQHAP 198
           +E   I  +  T  S ++M K+ G     +VN S+IGC  +H P
Sbjct: 294 IEYEGIQDIFNTQSSAKVMSKN-GVLFFGLVNNSAIGCWNEHQP 336


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 208 VYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKTGIYNNLKSF 351
           V++G     L     +G E  YS+TG     VC       IY  L SF
Sbjct: 165 VWLGAACISLPPLLIMGNEHTYSETGPSHCVVCQNFFYQ-IYATLGSF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,385
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)