Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c18
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   5.6  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   7.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.7  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   9.7  

>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 416 CESRTKHRHNFGNYNRP*CKKFRGYVVYADT 508
           CES T  R  FG   R    +F+ +VV+A T
Sbjct: 272 CESATSSRQGFGLERRTNQSQFQHFVVWAFT 302


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 306 KEIIWSQELANFAQRWVDQCDQNIQPDKEDICRDLVNAKVGQ--NIAT-ILGTTTGLNVK 476
           K ++   EL +F +       QNI PD   + ++LV     Q    AT +  +   +N++
Sbjct: 485 KVVMCLSELGDFGKLATYTSQQNITPDYVSLLQNLVRVNPDQAAEFATQMFNSNPSINLE 544

Query: 477 SFVDMW 494
             VD++
Sbjct: 545 KIVDIF 550


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 231  VSRINERRNFVAMGLANFLPQAADMKEIIWSQELANFAQRW 353
            ++R+ +   F    +A  + Q  ++KEIIW QE    A  W
Sbjct: 917  ITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAW 957


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 286 KKFASPIATKFLRSFILLTIWKISALVNNTV 194
           K FA PI++ FL    +  I  + +L +NT+
Sbjct: 41  KSFAQPISSSFLNRISITKIDDVDSLSDNTL 71


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 525  VAYYNDFNQSRKWL*DLFVILHPKEI 602
            +AY +    S +WL  LFV+LH + +
Sbjct: 1557 LAYASQLEASGQWLWSLFVLLHLENV 1582


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 126 CRNHTLCLYSSTGPGDQCDAYDKTVLLTSAEIFQIVSRIN 245
           C N  L   SS+G     +  +KT L T+  +  I+SR++
Sbjct: 682 CNNAYLLCISSSGMVYAWNVVNKTALFTANSLAPILSRVS 721


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 629 LLCKLVFHENFLWVQNYKQVLQPFSALIEVIVIGDVSLIRQYRHKPHIHETF 474
           +LC L  H+N   +  +K  +   +A  E + +G VSL R Y  KP I + F
Sbjct: 11  VLCSL--HQNS--ISTHKTYVA-VAAQDEYVRMGKVSLPRMYAVKPRIQKNF 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,283
Number of Sequences: 5004
Number of extensions: 56072
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)