Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c18
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0207 + 1528951-1529499                                           34   0.088
07_01_0211 + 1568646-1568716,1568722-1569085                           30   1.4  
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191...    29   3.3  
11_02_0117 + 8480350-8480424,8480958-8481223,8481254-8481374,848...    29   4.4  

>07_01_0207 + 1528951-1529499
          Length = 182

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 23/104 (22%), Positives = 44/104 (42%)
 Frame = +3

Query: 168 GDQCDAYDKTVLLTSAEIFQIVSRINERRNFVAMGLANFLPQAADMKEIIWSQELANFAQ 347
           G  C  +   V++T+  +    S   E      + L N +     ++E+ W   +A +A+
Sbjct: 8   GAACQCF--AVVVTAIVLMAATSAAGEDTAQDFVDLHNAVRDEVGVEEVTWDDTVAAYAE 65

Query: 348 RWVDQCDQNIQPDKEDICRDLVNAKVGQNIATILGTTTGLNVKS 479
            +  QC  + QP    +  +   A  G+NI  ++G   G +  S
Sbjct: 66  SYAAQCQADCQP----VSTNNGTATYGENIYVVVGPAGGNDTSS 105


>07_01_0211 + 1568646-1568716,1568722-1569085
          Length = 144

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 566 VRLVCNFAPKGNFRGKPIY 622
           V + CN++P GN+ GKP Y
Sbjct: 126 VFITCNYSPPGNYNGKPPY 144


>01_07_0270 -
           42417782-42417850,42418207-42418342,42418826-42419108,
           42419459-42419507,42419614-42419616
          Length = 179

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 626 LCKLVFHENFLWV-QNYKQVLQPFSALIEVIVIGDVSLIRQYRHKPHIHETF 474
           +CK +FHE  L+  ++Y     P    ++V  +  + L++ ++ K ++ ETF
Sbjct: 11  ICKYLFHEGVLYAKKDYNLAKHP---KVDVPNLEVIKLMQSFKSKEYVRETF 59


>11_02_0117 +
           8480350-8480424,8480958-8481223,8481254-8481374,
           8481463-8481726,8482210-8482581
          Length = 365

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +3

Query: 246 ERRNFVAMGLANFLPQAADMKEIIWSQELANFAQRWVDQCDQNIQPDKEDICRDLVNAKV 425
           E+    +  +  + P   ++K+++W   L + +   + + D N   D E I         
Sbjct: 246 EKEKLDSFNIPIYCPSVDELKQLVWQNNLLDISDIQLLEMDGNPMDDLEPIEGTAATQAT 305

Query: 426 GQNI-ATILGTTTGLNVKSFVD 488
           GQ++ AT+      L    F D
Sbjct: 306 GQSMSATLRAAIESLIASHFGD 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,602
Number of Sequences: 37544
Number of extensions: 316042
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)