Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c14
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    30   0.26 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.3  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   9.9  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 487 IFASLDFFFKNFSTAATLLGFDALFDFPQLEHLAFDLVDIMDTALRQGR 341
           +  SLD F+K+ +       F+  +DF   E + +DL+ +    L+QGR
Sbjct: 51  VILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAIDWDLLFVKLLELKQGR 99


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 222  PIAHPPCTPSASCTPIRCHPTPP 290
            P++ PP  P ++  P    PTPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPP 1708


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 485 LCLF-RFLFQKLFNGRHAPRIRCAFRFPATRTFGF 384
           +CL  RFLF K FN     R++  F   +   F F
Sbjct: 73  VCLMKRFLFNKFFNRHPFTRVKSCFSSSSPSKFSF 107


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 466 FFKNFSTAATLLGFDALFD 410
           FFK+  T+A  L FD+LF+
Sbjct: 139 FFKSLQTSAVNLEFDSLFE 157


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 666  YSQISARKGQYNFIIFHTFFSLVCLDV 586
            Y     RKG+YN + F+T F  +   +
Sbjct: 1042 YGSTLMRKGEYNIVQFYTCFIAIVFGI 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,084
Number of Sequences: 5004
Number of extensions: 50697
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)