Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte20c14
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160     27   1.5  
06_03_0114 - 16802566-16802931                                         29   2.6  
02_03_0228 + 16614423-16614582,16615066-16615151,16615354-16615410     29   3.4  
02_04_0393 - 22581651-22582046,22582191-22582196                       29   4.5  
04_04_0592 + 26477974-26479311                                         28   5.9  

>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
          Length = 306

 Score = 27.5 bits (58), Expect(2) = 1.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 234 PPCTPSASCTPIRCHPTPPSCQNP 305
           PP  P  +CTP+   P PP C  P
Sbjct: 186 PP--PPVTCTPVVEKPRPPPCARP 207



 Score = 21.4 bits (43), Expect(2) = 1.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 279 PTPPSCQNPEKC 314
           P PPSC  P  C
Sbjct: 228 PAPPSCCAPPPC 239


>06_03_0114 - 16802566-16802931
          Length = 121

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 PIAHPPCTPSASCTPIRCHPTPP 290
           P   PPC+PSA+ T     PTPP
Sbjct: 14  PSLPPPCSPSAATTVAPLLPTPP 36


>02_03_0228 + 16614423-16614582,16615066-16615151,16615354-16615410
          Length = 100

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 340 TPFEVVFFKHFSGFWHEGGVG*HRMGVHDADGVHGGCAIGDIIAAFNNTCSCYVSVSQR 164
           +PF ++   HF    +E G G HR G     G  G  A+   + A ++   CY  VS+R
Sbjct: 10  SPF-LLSLSHFLWRGNEPGAGGHRSGGRGGKGGPGAMAVDTKVEAAHDMILCY-RVSER 66


>02_04_0393 - 22581651-22582046,22582191-22582196
          Length = 133

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 331 EVVFFKHFSGFWHEGGVG*HRMGVHDADGVHGGCAIGDIIAAFNNTCS 188
           E+V++ H  G++H GGV  H    H   G H GC  G    + ++TCS
Sbjct: 90  ELVYYHHGYGYYHPGGVYHH----HPGYGPH-GCPCG-CNPSPDSTCS 131


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 234 PPCTPSASCTPIRCHPTPPSC--QNPEKCLKKTTSK 335
           PP TP+ + TP    P PP     +P K  KK ++K
Sbjct: 87  PPPTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAK 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,071
Number of Sequences: 37544
Number of extensions: 313376
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)